EY753713

Overview
NameEY753713
Unique NameEY753713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.915e-12
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 3
Query:   75 VSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARL 203
            V++RTRKFM +RLL RK  VIDVLHPG+A V K +++E  A++
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKM 47          

HSP 2 Score: 36.5798 bits (83), Expect = 7.915e-12
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 2
Query:  230 FVFKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRL 337
            FVF  R HFGGGK+T FG++  S   A+K  P  RL
Sbjct:   56 FVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRL 91          
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.952e-12
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 3
Query:   75 VSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARL 203
            V++RTRKFM +RLL RK  VIDVLHPG+A V K +++E  A++
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKM 47          

HSP 2 Score: 36.5798 bits (83), Expect = 7.952e-12
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 2
Query:  230 FVFKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRL 337
            FVF  R HFGGGK+T FG++  S   A+K  P  RL
Sbjct:   56 FVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRL 91          
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 7.952e-12
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 3
Query:   75 VSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARL 203
            V++RTRKFM +RLL RK  VIDVLHPG+A V K +++E  A++
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKM 47          

HSP 2 Score: 36.5798 bits (83), Expect = 7.952e-12
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 2
Query:  230 FVFKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRL 337
            FVF  R HFGGGK+T FG++  S   A+K  P  RL
Sbjct:   56 FVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRL 91          
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 4.955e-11
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 3
Query:   75 VSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARL 203
            V++RTRKFM +RLL RK  VI VLHPG+A V K +++E  A++
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKM 47          

HSP 2 Score: 36.5798 bits (83), Expect = 4.955e-11
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 2
Query:  230 FVFKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRL 337
            FVF  R HFGGGK+T FG++  S   A+K  P  RL
Sbjct:   56 FVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRL 91          
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 6.307e-11
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 3
Query:   72 AVSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARL 203
            AV++RTRKF+ +RLL RK  V+DV+HPG A VSK +L+    ++
Sbjct:   23 AVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKM 66          

HSP 2 Score: 36.5798 bits (83), Expect = 6.307e-11
Identity = 18/41 (43.90%), Postives = 24/41 (58.54%), Query Frame = 2
Query:  233 VFKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRLIGIGRA 355
            VF  + HFGGGK+T F L+  +    + F P  RL+ IG A
Sbjct:   76 VFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLA 116          
The following BLAST results are available for this feature:
BLAST of EY753713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RS24_HUMAN7.915e-1258.1440S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_PONAB7.952e-1258.1440S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_BOVIN7.952e-1258.1440S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_MACFA4.955e-1155.8140S ribosomal protein S24 OS=Macaca fascicularis G... [more]
RS24_RHIRA6.307e-1152.2740S ribosomal protein S24 OS=Rhizomucor racemosus ... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-A08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753713 ID=EY753713; Name=EY753713; organism=Citrus sinensis; type=EST; length=864bp
TTCCCAGGGCTGACCCACGCGTCCGGGCGAGGTCCTTGTCGACTTTTCNC
CTGGGAGAACCCCCGGGCTTCGCTGTCTCCCTTCGAACTAGGAAGTTCAT
GCCCTCCCGTCTCCTTTCCAGGAAGCACTTCGTTATTGATGTTCTTCATC
CTGGCCGGGCCGGTGTTTCCAAGGCTGATTTGCAGGAGATTTTTGCCCGG
CTGTCTGATGTGTGGGGGCGCCGCTCNTCTTTGTGTTTAAGCCCCGAGCT
CACTTTGGAGGTGGGAAATCTACCGCCTTTGGTCTCGTCTCTGGTTCGGG
TGCCTGTGCTCAGAAGTTTGTGCCCTGGTGCCGGCTTATCGGGATTGGCC
GCGCTTCCGTGGTCCTCTCGGCCGGGCGGCACATGAATGGCTGGCCCCCC
GGGCTCGTATTATCCGCGGTGGTCCTTACACCTGGGGCCCGCTGCCGCCA
AGAGCACGCGAGCTTCGGGTCCTTTGGTGTGTCTCCCGGCCTTGCTCTGT
GTGGCGCCCCTCTGCGCCCTTTCCCGCTGGGGGGGTGCCCCTGCCCCCCC
TGCGCTGTCCCGCGCTGCGGCCCTTGTTGCTTCTTTTCTTCCCCCTCTGT
CTTTCCCTCTCTCTCTTTTGCGCTGGCTGCCTTTGTCGGCGTTGCTCTCG
GGCTTTCTCCTCCTTCTCCCCCGGGCCCCCCTCTCCCCTTTTGGGGTTTT
CCGTGCGCCCCTCCCTCTCCTGCCGGCCCCTCCCCCCCGGCCCGGGCTCC
TTCCTTCCGTTCCCCCGGCGGCCCGGCCGCCCCCCCTCCCCATCGGGNCC
CTCCCTTTCCTCGTCCCGGCCCGTCGGCGTGCCGGGCCCCCCCCAATAAA
AAAAAAAAACGAAA
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