EY753699

Overview
NameEY753699
Unique NameEY753699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY753699 vs. ExPASy Swiss-Prot
Match: SNX12_HUMAN (Sorting nexin-12 OS=Homo sapiens GN=SNX12 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 41/92 (44.57%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   22 EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE-------FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMER 276
            E  V RRYSDF WL++ L E+   I +PPLP K+   +  F  +       FIE RRQGL+ F+N+IA HP  Q    L  FLQ  EE ++R
Sbjct:   65 ESCVRRRYSDFEWLKNEL-ERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQ--EEAIDR 153
[Close]
BLAST of EY753699 vs. ExPASy Swiss-Prot
Match: SNX12_MOUSE (Sorting nexin-12 OS=Mus musculus GN=Snx12 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   22 EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK-FR-----FSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMER 276
            E  V RRYSDF WL++ L E+   I +PPLP K+     FR     F   FIE RRQGL+ F+N+IA HP  Q    L  FLQ  EE ++R
Sbjct:   65 ESCVRRRYSDFEWLKNEL-ERDSKIVVPPLPGKALKRHPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQ--EEAIDR 152
The following BLAST results are available for this feature:
BLAST of EY753699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SNX12_HUMAN5.397e-1144.57Sorting nexin-12 OS=Homo sapiens GN=SNX12 PE=1 SV=... [more]
SNX12_MOUSE7.049e-1147.25Sorting nexin-12 OS=Mus musculus GN=Snx12 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-005-H05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753699 ID=EY753699; Name=EY753699; organism=Citrus sinensis; type=EST; length=868bp
CCACGCGTCCGCCAAGGCCCCGAGAAGATTGTTATTCGCCGTTACAGTGA
TTTTGTCTGGTTACGTGATCGACTTTTTGAGAAGTACAAAGGCATTTTCA
TTCCCCCTCTTCCTGAGAAGAGTGCTGTAGAGAAGTTTCGTTTCAGTGCT
GAATTTATTGAGATGAGACGCCAAGGATTGGATTTGTTTGTCAATCGGAT
TGCTTCACATCCTGAGCTGCAGCAAAGTGAGGATTTAAAAACATTTTTGC
AGGCAGATGAAGAGACAATGGAGAGATTAAGGTCTCAAGACACTGGTTAT
TTCAAAAAGAAGCCAGCTGATTTGATGCAAATCTTCAAGGATGTACAATC
TAAAGTGAGTGACGTTGTTCTTGGAAAAGAGAAGCCAGTTGAAGAATCTA
ATCCTGAATACGAGAAGCTGAAACACTACATTTTTGAGCTTGAAAACCAC
TTGGCTGAAGCTCAGAAACATGCATATCGTCTTGTCAAAAGACATAGAGA
GTTGGGGGAATCTCTATCTGATTTTGGGAAGGCAGCTAAGCTTCTTGGTG
CTTGTGAAGGAGATGCTCTTGGNAAGGCGTTCTCTGAGCTTGGGATGAAA
TCTGAGGCATTATCAGTTAAGCTGCAAAGAGAGGGCCATCCACTTCTTAT
GAATTTTGAAGAACCTTTGAAGAATTATGTTCGAGCTGTGCAATCCATAA
AAGGCAACGATGCAGAAAGAAGCAATGCTTTTAGGCAACATGGGGACTTG
CTGAACCAATGAAGTGAAAGGAATAAATTTGGCAAACTCATGTTACCCCA
TCTGTAAGGGTTGGGAAGGCTGAAATGATACAAGGGTTTGAAGGCGAAAA
GGGGGGCTCCCCTGGGGA
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