EY753608

Overview
NameEY753608
Unique NameEY753608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_BACHD (RNA polymerase sigma factor rpoD OS=Bacillus halodurans GN=sigA PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.746e-17
Identity = 41/115 (35.65%), Postives = 73/115 (63.48%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTGLS 671
            +  L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD+ +G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P   E A+   L+
Sbjct:  136 KRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEVAEEMDLT 250          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_COXBU (RNA polymerase sigma factor rpoS OS=Coxiella burnetii GN=rpoS PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.142e-16
Identity = 39/108 (36.11%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN--SHGKYPEDI 644
            R+++I++   LV+ +AR+Y   G+PF DL++ GN+G+L   E+FD  RG++FSTY  +WIR++I + +   +R +++P  + +E++   +  K LT    H   PED+
Sbjct:  114 RKQMIEANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQTIERAIMNQSRTVRLPIHVIKELNVYLRTAKKLTQEVDHEATPEDV 221          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_XYLFT (RNA polymerase sigma factor rpoD OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rpoD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.142e-16
Identity = 38/110 (34.55%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656
            ++E++++   LV+ +A+ Y   G+ F DL+Q GN+G+++   +F+H RG+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ +  + +    G+     E AK
Sbjct:  380 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVCKFEHRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAK 489          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_XYLFA (RNA polymerase sigma factor rpoD OS=Xylella fastidiosa GN=rpoD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.142e-16
Identity = 38/110 (34.55%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656
            ++E++++   LV+ +A+ Y   G+ F DL+Q GN+G+++   +F+H RG+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ +  + +    G+     E AK
Sbjct:  380 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVCKFEHRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAK 489          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_ENTFA (RNA polymerase sigma factor rpoD OS=Enterococcus faecalis GN=rpoD PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16
Identity = 38/103 (36.89%), Postives = 69/103 (66.99%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635
            ++ L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD+ +G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P
Sbjct:  132 KQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREP 234          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_COXBU (RNA polymerase sigma factor rpoD OS=Coxiella burnetii GN=rpoD PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16
Identity = 36/100 (36.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHG 626
            ++E+I++   LV+ +A+ Y   G+ F DL+Q GN+G+++  ++F++ RGYKFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ +  + +    G
Sbjct:  459 KKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETG 558          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_STRR6 (RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpoD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16
Identity = 37/103 (35.92%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635
            ++ L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  ++FD+++G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P
Sbjct:  132 KQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDP 234          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_STRPN (RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae GN=rpoD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16
Identity = 37/103 (35.92%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635
            ++ L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  ++FD+++G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P
Sbjct:  132 KQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDP 234          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_STRMU (RNA polymerase sigma factor rpoD OS=Streptococcus mutans GN=rpoD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16
Identity = 37/103 (35.92%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635
            ++ L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  ++FD+++G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P
Sbjct:  134 KQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDP 236          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_MYCGE (RNA polymerase sigma factor rpoD OS=Mycoplasma genitalium GN=rpoD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16
Identity = 41/115 (35.65%), Postives = 72/115 (62.61%), Query Frame = 3
Query:  321 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTG 665
            Y   +L+ S   LV+ +A+ +   G+ F+DL+Q GN+G+L+   +F+ + G KFSTY  +WI+++I++ +A  AR ++IP  +   I+++ KA +AL    G+ P D E A+  G
Sbjct:  245 YAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNKFSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERALYQELGREPTDEELAEKMG 359          
The following BLAST results are available for this feature:
BLAST of EY753608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RPOD_BACHD8.746e-1735.65RNA polymerase sigma factor rpoD OS=Bacillus halod... [more]
RPOS_COXBU1.142e-1636.11RNA polymerase sigma factor rpoS OS=Coxiella burne... [more]
RPOD_XYLFT1.142e-1634.55RNA polymerase sigma factor rpoD OS=Xylella fastid... [more]
RPOD_XYLFA1.142e-1634.55RNA polymerase sigma factor rpoD OS=Xylella fastid... [more]
RPOD_ENTFA1.492e-1636.89RNA polymerase sigma factor rpoD OS=Enterococcus f... [more]
RPOD_COXBU1.492e-1636.00RNA polymerase sigma factor rpoD OS=Coxiella burne... [more]
RPOD_STRR63.324e-1635.92RNA polymerase sigma factor rpoD OS=Streptococcus ... [more]
RPOD_STRPN3.324e-1635.92RNA polymerase sigma factor rpoD OS=Streptococcus ... [more]
RPOD_STRMU3.324e-1635.92RNA polymerase sigma factor rpoD OS=Streptococcus ... [more]
RPOD_MYCGE3.324e-1635.65RNA polymerase sigma factor rpoD OS=Mycoplasma gen... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-G10-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753608 ID=EY753608; Name=EY753608; organism=Citrus sinensis; type=EST; length=879bp
AAAAGAATTTGAAGACAGCAAGGGTATCAGAAGAATCCATTGAAACTTAT
TTGCTGTCTTTGCCTTCAGAAGCCTTGCAAGAAGGCTTAAAGCAGCCCAC
TATCTTTTCAGCAGAAAGAGCATTGAACTCTAGAGGTAGGCGATTGATGA
TTGCCAGAAACGAGGCAGAAATGTCCAAGGGAGTTCAGGTGGTTGCCAAC
CTGGAGAGGATAAAAACAACTCTGGAAAAAGAAAGTGGGAAAGCAGCCAG
ATTGAATTGCTGGGCTCAAGCAGCTGGAGTCAGTGAGAGGGTGCTGAAAC
AGCATCTGGCTTTTGGTTGGTATTGCAGAGAAGAGCTGATAAAGAGTACT
CGCCCCTTAGTGTTATTCCTTGCGAGAAACTACAGGGGTCTAGGAATACC
GTTTTCAGACTTGCTCCAGGCTGGAAATGTTGGTGTTCTACAAGGCGCAG
AGAGGTTCGACCACACAAGGGGATACAAATTCTCAACTTATGTCCAGTAC
TGGATAAGGAAGTCAATATCAAAGATGGTGGCAAGGCATGCTAGAGGAAT
CAAAATTCCTTGCAAATTAAACAGGGAAATAAGTAAGATTCAGAAAGCTC
GAAAAGCCCTGACCAACAGCCATGGGAAATACCCAGAAGACATTGAAAAT
GCCAAGTACACGGGTCTTTCTTTTGGCTGAAATCAGATCAGCTAGTGAAT
GCCTAAGAATTGTGGGGTCAATTGATCAGAAAATGGGGGATGGNCTAATG
CTAAATATTGGGATGAATTCAACTGTTTTTTCATGCATGTAAAATCCCCA
ACATTAAGCTGTAGGCGGCCTTTTCTGCTCATTGAATTTGACCATAGAAT
GAAGTTGCCTTCCGTTTCAAAAATTGGGT
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