EY753608

Overview
NameEY753608
Unique NameEY753608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_STAES (RNA polymerase sigma factor rpoD OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpoD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.669e-16
Identity = 38/103 (36.89%), Postives = 68/103 (66.02%), Query Frame = 3 
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635
            +  L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD ++G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P
Sbjct:  132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDP 234
[Close]
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_STAEQ (RNA polymerase sigma factor rpoD OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpoD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.669e-16
Identity = 38/103 (36.89%), Postives = 68/103 (66.02%), Query Frame = 3 
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635
            +  L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD ++G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P
Sbjct:  132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDP 234
[Close]
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_LISMO (RNA polymerase sigma factor rpoD OS=Listeria monocytogenes GN=rpoD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.669e-16
Identity = 39/104 (37.50%), Postives = 68/104 (65.38%), Query Frame = 3 
Query:  336 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 647
            L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD  +G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + +++L    G+ P   E
Sbjct:  141 LAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEE 244
[Close]
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_LISIN (RNA polymerase sigma factor rpoD OS=Listeria innocua GN=rpoD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.669e-16
Identity = 39/104 (37.50%), Postives = 68/104 (65.38%), Query Frame = 3 
Query:  336 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 647
            L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD  +G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + +++L    G+ P   E
Sbjct:  141 LAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEE 244
[Close]
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_STAAW (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MW2) GN=rpoD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16
Identity = 38/103 (36.89%), Postives = 67/103 (65.05%), Query Frame = 3 
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635
            +  L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD  +G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P
Sbjct:  132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDP 234
[Close]
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_STAAS (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MSSA476) GN=rpoD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16
Identity = 38/103 (36.89%), Postives = 67/103 (65.05%), Query Frame = 3 
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635
            +  L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD  +G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P
Sbjct:  132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDP 234
[Close]
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_STAAR (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MRSA252) GN=rpoD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16
Identity = 38/103 (36.89%), Postives = 67/103 (65.05%), Query Frame = 3 
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635
            +  L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD  +G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P
Sbjct:  132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDP 234
[Close]
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_STAAN (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain N315) GN=rpoD PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16
Identity = 38/103 (36.89%), Postives = 67/103 (65.05%), Query Frame = 3 
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635
            +  L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD  +G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P
Sbjct:  132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDP 234
[Close]
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_STAAM (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpoD PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16
Identity = 38/103 (36.89%), Postives = 67/103 (65.05%), Query Frame = 3 
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635
            +  L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD  +G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P
Sbjct:  132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDP 234
[Close]
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_STAAC (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain COL) GN=rpoD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16
Identity = 38/103 (36.89%), Postives = 67/103 (65.05%), Query Frame = 3 
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635
            +  L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD  +G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P
Sbjct:  132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDP 234
The following BLAST results are available for this feature:
BLAST of EY753608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RPOD_STAES5.669e-1636.89RNA polymerase sigma factor rpoD OS=Staphylococcus... [more]
RPOD_STAEQ5.669e-1636.89RNA polymerase sigma factor rpoD OS=Staphylococcus... [more]
RPOD_LISMO5.669e-1637.50RNA polymerase sigma factor rpoD OS=Listeria monoc... [more]
RPOD_LISIN5.669e-1637.50RNA polymerase sigma factor rpoD OS=Listeria innoc... [more]
RPOD_STAAW7.404e-1636.89RNA polymerase sigma factor rpoD OS=Staphylococcus... [more]
RPOD_STAAS7.404e-1636.89RNA polymerase sigma factor rpoD OS=Staphylococcus... [more]
RPOD_STAAR7.404e-1636.89RNA polymerase sigma factor rpoD OS=Staphylococcus... [more]
RPOD_STAAN7.404e-1636.89RNA polymerase sigma factor rpoD OS=Staphylococcus... [more]
RPOD_STAAM7.404e-1636.89RNA polymerase sigma factor rpoD OS=Staphylococcus... [more]
RPOD_STAAC7.404e-1636.89RNA polymerase sigma factor rpoD OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-G10-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753608 ID=EY753608; Name=EY753608; organism=Citrus sinensis; type=EST; length=879bp
AAAAGAATTTGAAGACAGCAAGGGTATCAGAAGAATCCATTGAAACTTAT
TTGCTGTCTTTGCCTTCAGAAGCCTTGCAAGAAGGCTTAAAGCAGCCCAC
TATCTTTTCAGCAGAAAGAGCATTGAACTCTAGAGGTAGGCGATTGATGA
TTGCCAGAAACGAGGCAGAAATGTCCAAGGGAGTTCAGGTGGTTGCCAAC
CTGGAGAGGATAAAAACAACTCTGGAAAAAGAAAGTGGGAAAGCAGCCAG
ATTGAATTGCTGGGCTCAAGCAGCTGGAGTCAGTGAGAGGGTGCTGAAAC
AGCATCTGGCTTTTGGTTGGTATTGCAGAGAAGAGCTGATAAAGAGTACT
CGCCCCTTAGTGTTATTCCTTGCGAGAAACTACAGGGGTCTAGGAATACC
GTTTTCAGACTTGCTCCAGGCTGGAAATGTTGGTGTTCTACAAGGCGCAG
AGAGGTTCGACCACACAAGGGGATACAAATTCTCAACTTATGTCCAGTAC
TGGATAAGGAAGTCAATATCAAAGATGGTGGCAAGGCATGCTAGAGGAAT
CAAAATTCCTTGCAAATTAAACAGGGAAATAAGTAAGATTCAGAAAGCTC
GAAAAGCCCTGACCAACAGCCATGGGAAATACCCAGAAGACATTGAAAAT
GCCAAGTACACGGGTCTTTCTTTTGGCTGAAATCAGATCAGCTAGTGAAT
GCCTAAGAATTGTGGGGTCAATTGATCAGAAAATGGGGGATGGNCTAATG
CTAAATATTGGGATGAATTCAACTGTTTTTTCATGCATGTAAAATCCCCA
ACATTAAGCTGTAGGCGGCCTTTTCTGCTCATTGAATTTGACCATAGAAT
GAAGTTGCCTTCCGTTTCAAAAATTGGGT
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