EY753608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_STAA8 (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain NCTC 8325) GN=rpoD PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16 Identity = 38/103 (36.89%), Postives = 67/103 (65.05%), Query Frame = 3 Query: 327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635 + L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +G+KFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P Sbjct: 132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDP 234
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_PSEAE (RNA polymerase sigma factor rpoS OS=Pseudomonas aeruginosa GN=rpoS PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15 Identity = 39/110 (35.45%), Postives = 69/110 (62.73%), Query Frame = 3 Query: 327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN--SHGKYPEDIEN 650 R+ +I+S LV+ +AR Y G+ DL++ GN+G+++ E+FD RG++FSTY +WIR++I + + R I++P + +E++ +A + LT+ H PE+I N Sbjct: 96 RKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIAN 205
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_MYCPN (RNA polymerase sigma factor rpoD OS=Mycoplasma pneumoniae GN=rpoD PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15 Identity = 40/115 (34.78%), Postives = 71/115 (61.74%), Query Frame = 3 Query: 321 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTG 665 Y +L+ S LV+ +A+ + G+ F+DL+Q GN+G+L+ +F+ + G KFSTY +WI+++I++ +A AR ++IP + I+++ KA +AL G+ P E A+ G Sbjct: 247 YAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNKFSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERALNQELGREPTAEELAEKMG 361
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_YEREN (RNA polymerase sigma factor rpoS OS=Yersinia enterocolitica GN=rpoS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.544e-13 Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 3 Query: 327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656 R +I+S LV+ +AR Y G+ DL++ GN+G+++ E+FD RG++FSTY +WIR++I + + R I++P + +E++ + + L++ P E A+ Sbjct: 92 RRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 201
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_VIBCH (RNA polymerase sigma factor rpoS OS=Vibrio cholerae GN=rpoS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13 Identity = 35/108 (32.41%), Postives = 66/108 (61.11%), Query Frame = 3 Query: 327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN--SHGKYPEDI 644 R+ +I+S LV+ ++R Y G+ DL++ GN+G+++ E+FD RG++FSTY +WIR++I + + R I++P + +E++ + + L+ H PE+I Sbjct: 92 RKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEI 199
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_SHIFL (RNA polymerase sigma factor rpoS OS=Shigella flexneri GN=rpoS PE=3 SV=3) HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13 Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 3 Query: 327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656 R +I+S LV+ +AR Y G+ DL++ GN+G+++ E+FD RG++FSTY +WIR++I + + R I++P + +E++ + + L++ P E A+ Sbjct: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_SALTY (RNA polymerase sigma factor rpoS OS=Salmonella typhimurium GN=rpoS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13 Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 3 Query: 327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656 R +I+S LV+ +AR Y G+ DL++ GN+G+++ E+FD RG++FSTY +WIR++I + + R I++P + +E++ + + L++ P E A+ Sbjct: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_SALTI (RNA polymerase sigma factor rpoS OS=Salmonella typhi GN=rpoS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13 Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 3 Query: 327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656 R +I+S LV+ +AR Y G+ DL++ GN+G+++ E+FD RG++FSTY +WIR++I + + R I++P + +E++ + + L++ P E A+ Sbjct: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_SALDU (RNA polymerase sigma factor rpoS OS=Salmonella dublin GN=rpoS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13 Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 3 Query: 327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656 R +I+S LV+ +AR Y G+ DL++ GN+G+++ E+FD RG++FSTY +WIR++I + + R I++P + +E++ + + L++ P E A+ Sbjct: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_ECOLI (RNA polymerase sigma factor rpoS OS=Escherichia coli (strain K12) GN=rpoS PE=3 SV=3) HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13 Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 3 Query: 327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656 R +I+S LV+ +AR Y G+ DL++ GN+G+++ E+FD RG++FSTY +WIR++I + + R I++P + +E++ + + L++ P E A+ Sbjct: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 The following BLAST results are available for this feature:
BLAST of EY753608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 91
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Sequences
The
following sequences are available for this feature:
EST sequence >EY753608 ID=EY753608; Name=EY753608; organism=Citrus sinensis; type=EST; length=879bpback to top |