EY753608

Overview
NameEY753608
Unique NameEY753608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_STAA8 (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain NCTC 8325) GN=rpoD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16
Identity = 38/103 (36.89%), Postives = 67/103 (65.05%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635
            +  L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD  +G+KFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P
Sbjct:  132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDP 234          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_PSEAE (RNA polymerase sigma factor rpoS OS=Pseudomonas aeruginosa GN=rpoS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15
Identity = 39/110 (35.45%), Postives = 69/110 (62.73%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN--SHGKYPEDIEN 650
            R+ +I+S   LV+ +AR Y   G+   DL++ GN+G+++  E+FD  RG++FSTY  +WIR++I + +    R I++P  + +E++   +A + LT+   H   PE+I N
Sbjct:   96 RKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIAN 205          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_MYCPN (RNA polymerase sigma factor rpoD OS=Mycoplasma pneumoniae GN=rpoD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15
Identity = 40/115 (34.78%), Postives = 71/115 (61.74%), Query Frame = 3
Query:  321 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTG 665
            Y   +L+ S   LV+ +A+ +   G+ F+DL+Q GN+G+L+   +F+ + G KFSTY  +WI+++I++ +A  AR ++IP  +   I+++ KA +AL    G+ P   E A+  G
Sbjct:  247 YAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNKFSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERALNQELGREPTAEELAEKMG 361          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_YEREN (RNA polymerase sigma factor rpoS OS=Yersinia enterocolitica GN=rpoS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.544e-13
Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656
            R  +I+S   LV+ +AR Y   G+   DL++ GN+G+++  E+FD  RG++FSTY  +WIR++I + +    R I++P  + +E++   +  + L++     P   E A+
Sbjct:   92 RRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 201          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_VIBCH (RNA polymerase sigma factor rpoS OS=Vibrio cholerae GN=rpoS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13
Identity = 35/108 (32.41%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN--SHGKYPEDI 644
            R+ +I+S   LV+ ++R Y   G+   DL++ GN+G+++  E+FD  RG++FSTY  +WIR++I + +    R I++P  + +E++   +  + L+    H   PE+I
Sbjct:   92 RKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEI 199          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_SHIFL (RNA polymerase sigma factor rpoS OS=Shigella flexneri GN=rpoS PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13
Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656
            R  +I+S   LV+ +AR Y   G+   DL++ GN+G+++  E+FD  RG++FSTY  +WIR++I + +    R I++P  + +E++   +  + L++     P   E A+
Sbjct:   91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_SALTY (RNA polymerase sigma factor rpoS OS=Salmonella typhimurium GN=rpoS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13
Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656
            R  +I+S   LV+ +AR Y   G+   DL++ GN+G+++  E+FD  RG++FSTY  +WIR++I + +    R I++P  + +E++   +  + L++     P   E A+
Sbjct:   91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_SALTI (RNA polymerase sigma factor rpoS OS=Salmonella typhi GN=rpoS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13
Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656
            R  +I+S   LV+ +AR Y   G+   DL++ GN+G+++  E+FD  RG++FSTY  +WIR++I + +    R I++P  + +E++   +  + L++     P   E A+
Sbjct:   91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_SALDU (RNA polymerase sigma factor rpoS OS=Salmonella dublin GN=rpoS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13
Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656
            R  +I+S   LV+ +AR Y   G+   DL++ GN+G+++  E+FD  RG++FSTY  +WIR++I + +    R I++P  + +E++   +  + L++     P   E A+
Sbjct:   91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOS_ECOLI (RNA polymerase sigma factor rpoS OS=Escherichia coli (strain K12) GN=rpoS PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13
Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656
            R  +I+S   LV+ +AR Y   G+   DL++ GN+G+++  E+FD  RG++FSTY  +WIR++I + +    R I++P  + +E++   +  + L++     P   E A+
Sbjct:   91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200          
The following BLAST results are available for this feature:
BLAST of EY753608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RPOD_STAA87.404e-1636.89RNA polymerase sigma factor rpoD OS=Staphylococcus... [more]
RPOS_PSEAE1.649e-1535.45RNA polymerase sigma factor rpoS OS=Pseudomonas ae... [more]
RPOD_MYCPN1.649e-1534.78RNA polymerase sigma factor rpoD OS=Mycoplasma pne... [more]
RPOS_YEREN1.544e-1331.82RNA polymerase sigma factor rpoS OS=Yersinia enter... [more]
RPOS_VIBCH2.016e-1332.41RNA polymerase sigma factor rpoS OS=Vibrio cholera... [more]
RPOS_SHIFL2.016e-1331.82RNA polymerase sigma factor rpoS OS=Shigella flexn... [more]
RPOS_SALTY2.016e-1331.82RNA polymerase sigma factor rpoS OS=Salmonella typ... [more]
RPOS_SALTI2.016e-1331.82RNA polymerase sigma factor rpoS OS=Salmonella typ... [more]
RPOS_SALDU2.016e-1331.82RNA polymerase sigma factor rpoS OS=Salmonella dub... [more]
RPOS_ECOLI2.016e-1331.82RNA polymerase sigma factor rpoS OS=Escherichia co... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-G10-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753608 ID=EY753608; Name=EY753608; organism=Citrus sinensis; type=EST; length=879bp
AAAAGAATTTGAAGACAGCAAGGGTATCAGAAGAATCCATTGAAACTTAT
TTGCTGTCTTTGCCTTCAGAAGCCTTGCAAGAAGGCTTAAAGCAGCCCAC
TATCTTTTCAGCAGAAAGAGCATTGAACTCTAGAGGTAGGCGATTGATGA
TTGCCAGAAACGAGGCAGAAATGTCCAAGGGAGTTCAGGTGGTTGCCAAC
CTGGAGAGGATAAAAACAACTCTGGAAAAAGAAAGTGGGAAAGCAGCCAG
ATTGAATTGCTGGGCTCAAGCAGCTGGAGTCAGTGAGAGGGTGCTGAAAC
AGCATCTGGCTTTTGGTTGGTATTGCAGAGAAGAGCTGATAAAGAGTACT
CGCCCCTTAGTGTTATTCCTTGCGAGAAACTACAGGGGTCTAGGAATACC
GTTTTCAGACTTGCTCCAGGCTGGAAATGTTGGTGTTCTACAAGGCGCAG
AGAGGTTCGACCACACAAGGGGATACAAATTCTCAACTTATGTCCAGTAC
TGGATAAGGAAGTCAATATCAAAGATGGTGGCAAGGCATGCTAGAGGAAT
CAAAATTCCTTGCAAATTAAACAGGGAAATAAGTAAGATTCAGAAAGCTC
GAAAAGCCCTGACCAACAGCCATGGGAAATACCCAGAAGACATTGAAAAT
GCCAAGTACACGGGTCTTTCTTTTGGCTGAAATCAGATCAGCTAGTGAAT
GCCTAAGAATTGTGGGGTCAATTGATCAGAAAATGGGGGATGGNCTAATG
CTAAATATTGGGATGAATTCAACTGTTTTTTCATGCATGTAAAATCCCCA
ACATTAAGCTGTAGGCGGCCTTTTCTGCTCATTGAATTTGACCATAGAAT
GAAGTTGCCTTCCGTTTCAAAAATTGGGT
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