EY753608

Overview
NameEY753608
Unique NameEY753608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_SERMA (RNA polymerase sigma factor rpoD (Fragment) OS=Serratia marcescens GN=rpoD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.439e-13
Identity = 32/87 (36.78%), Postives = 57/87 (65.52%), Query Frame = 3 
Query:  396 IPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656
            + F DL+Q GN+G+++  ++F++ RGYKFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ +  + +    G+ P   E A+
Sbjct:    1 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAE 87
The following BLAST results are available for this feature:
BLAST of EY753608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RPOD_SERMA3.439e-1336.78RNA polymerase sigma factor rpoD (Fragment) OS=Ser... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-G10-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753608 ID=EY753608; Name=EY753608; organism=Citrus sinensis; type=EST; length=879bp
AAAAGAATTTGAAGACAGCAAGGGTATCAGAAGAATCCATTGAAACTTAT
TTGCTGTCTTTGCCTTCAGAAGCCTTGCAAGAAGGCTTAAAGCAGCCCAC
TATCTTTTCAGCAGAAAGAGCATTGAACTCTAGAGGTAGGCGATTGATGA
TTGCCAGAAACGAGGCAGAAATGTCCAAGGGAGTTCAGGTGGTTGCCAAC
CTGGAGAGGATAAAAACAACTCTGGAAAAAGAAAGTGGGAAAGCAGCCAG
ATTGAATTGCTGGGCTCAAGCAGCTGGAGTCAGTGAGAGGGTGCTGAAAC
AGCATCTGGCTTTTGGTTGGTATTGCAGAGAAGAGCTGATAAAGAGTACT
CGCCCCTTAGTGTTATTCCTTGCGAGAAACTACAGGGGTCTAGGAATACC
GTTTTCAGACTTGCTCCAGGCTGGAAATGTTGGTGTTCTACAAGGCGCAG
AGAGGTTCGACCACACAAGGGGATACAAATTCTCAACTTATGTCCAGTAC
TGGATAAGGAAGTCAATATCAAAGATGGTGGCAAGGCATGCTAGAGGAAT
CAAAATTCCTTGCAAATTAAACAGGGAAATAAGTAAGATTCAGAAAGCTC
GAAAAGCCCTGACCAACAGCCATGGGAAATACCCAGAAGACATTGAAAAT
GCCAAGTACACGGGTCTTTCTTTTGGCTGAAATCAGATCAGCTAGTGAAT
GCCTAAGAATTGTGGGGTCAATTGATCAGAAAATGGGGGATGGNCTAATG
CTAAATATTGGGATGAATTCAACTGTTTTTTCATGCATGTAAAATCCCCA
ACATTAAGCTGTAGGCGGCCTTTTCTGCTCATTGAATTTGACCATAGAAT
GAAGTTGCCTTCCGTTTCAAAAATTGGGT
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