EY753582

Overview
NameEY753582
Unique NameEY753582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 7.758e-26
Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + VD KVRTD TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKVDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 1.013e-25
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4)

HSP 1 Score: 117.472 bits (293), Expect = 1.013e-25
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.013e-25
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.013e-25
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 1.013e-25
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 1.013e-25
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4X_RAT (40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.013e-25
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4X_MOUSE (40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.013e-25
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4X_MESAU (40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.013e-25
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
The following BLAST results are available for this feature:
BLAST of EY753582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RS4_ICTPU7.758e-2674.0340S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4_XENTR1.013e-2572.7340S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4_XENLA1.013e-2572.7340S ribosomal protein S4 OS=Xenopus laevis GN=rps4... [more]
RS4_CRIGR1.013e-2572.7340S ribosomal protein S4 OS=Cricetulus griseus GN=... [more]
RS4_CHICK1.013e-2572.7340S ribosomal protein S4 OS=Gallus gallus GN=RPS4 ... [more]
RS4_BOVIN1.013e-2572.7340S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=... [more]
RS4Y1_MONDO1.013e-2572.7340S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_RAT1.013e-2572.7340S ribosomal protein S4, X isoform OS=Rattus norv... [more]
RS4X_MOUSE1.013e-2572.7340S ribosomal protein S4, X isoform OS=Mus musculu... [more]
RS4X_MESAU1.013e-2572.7340S ribosomal protein S4, X isoform OS=Mesocricetu... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-E08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753582 ID=EY753582; Name=EY753582; organism=Citrus sinensis; type=EST; length=867bp
ACATTTGTAGAGGCTTAATGCCCCAAACACTGGATGCTTGACAAACTTGG
TGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGT
GTTTGCCCTTAATTCTTATCTTACGCAACCGCTTGAAGTATGCTCTTACA
TACCGAGAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTTGATGC
TAAGGTTCGCACAGATAAGACTTACCCTGCTGGGTTCATGGGTATGCAGT
CCTCAGCCCATATACTATTATTGCCTTTTATAAATTATCCATGCCTTATT
TGTGAGGAAAATGGAATGTAATAGTAGAATCATTGCTTTTTTGTAGATGC
GGGCTCAAAATCATACTTGTGTTCATGATGATTCCTCCATTTCTGATATC
ATATTCCAAATTTAAGCCTCCTTGATTTACTCTTTCTTTAAGAAGTTTTT
TAAGATTTTTCACTTGTCCTTTTGACTATCAGATGTTGTGTCAATTCCAA
AGACGAATGAGAACTTCCGTCTNCTTTACGACACCAAGGGCCGGTTCCGC
CTTCATTCAATCAGGGATGAGGAGGCTAAGGTTTGTACTGACAGCTCANA
TTACCTGATTGTTTCTCCTTACTTTAATGAGAAGTAATTGTGGGCACCTT
TATTTCTCTTGAACTTANATATTAGGAGGATGCATTATTGNTTTAAAATG
GTATATTAAAGAAACATCTCCTCCGGTAAAGTGCCCTTATTAACTAACTT
TGGGGGGGGGTACCCGGGAACTTTGACTGAAAAATTCTTACGCCCCCATA
ATCCTATCATTGGCAAATATTATCTTGCAAACTCTATTATACTTGGAAAC
TGGGGCTGCTTTGGTTA
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