EY753582

Overview
NameEY753582
Unique NameEY753582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 2.257e-25
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYP GFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPTGFMDVVS 91          
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.948e-25
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91          
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.850e-25
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91          
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.850e-25
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91          
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.850e-25
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91          
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.850e-25
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91          
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 5.028e-25
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVIS 91          
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 5.028e-25
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:   15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVIS 91          
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.560e-24
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 1
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 240
            P HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL  REV AILMQR V VD KVRTD T+PAGFM
Sbjct:   15 PSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFM 87          
BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.261e-24
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 1
Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 240
            PK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VD KVRTD TYPAG+M
Sbjct:   15 PKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYM 87          
The following BLAST results are available for this feature:
BLAST of EY753582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RS4X_DANRE2.257e-2571.4340S ribosomal protein S4, X isoform OS=Danio rerio... [more]
RS4Y1_MACFU2.948e-2571.4340S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4Y1_PANTR3.850e-2571.4340S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA3.850e-2571.4340S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4Y1_HUMAN3.850e-2571.4340S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4Y1_GORGO3.850e-2571.4340S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4Y2_PANTR5.028e-2571.4340S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4Y1_PONPY5.028e-2571.4340S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4_YARLI5.560e-2472.6040S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_DROME7.261e-2472.6040S ribosomal protein S4 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-E08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753582 ID=EY753582; Name=EY753582; organism=Citrus sinensis; type=EST; length=867bp
ACATTTGTAGAGGCTTAATGCCCCAAACACTGGATGCTTGACAAACTTGG
TGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGT
GTTTGCCCTTAATTCTTATCTTACGCAACCGCTTGAAGTATGCTCTTACA
TACCGAGAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTTGATGC
TAAGGTTCGCACAGATAAGACTTACCCTGCTGGGTTCATGGGTATGCAGT
CCTCAGCCCATATACTATTATTGCCTTTTATAAATTATCCATGCCTTATT
TGTGAGGAAAATGGAATGTAATAGTAGAATCATTGCTTTTTTGTAGATGC
GGGCTCAAAATCATACTTGTGTTCATGATGATTCCTCCATTTCTGATATC
ATATTCCAAATTTAAGCCTCCTTGATTTACTCTTTCTTTAAGAAGTTTTT
TAAGATTTTTCACTTGTCCTTTTGACTATCAGATGTTGTGTCAATTCCAA
AGACGAATGAGAACTTCCGTCTNCTTTACGACACCAAGGGCCGGTTCCGC
CTTCATTCAATCAGGGATGAGGAGGCTAAGGTTTGTACTGACAGCTCANA
TTACCTGATTGTTTCTCCTTACTTTAATGAGAAGTAATTGTGGGCACCTT
TATTTCTCTTGAACTTANATATTAGGAGGATGCATTATTGNTTTAAAATG
GTATATTAAAGAAACATCTCCTCCGGTAAAGTGCCCTTATTAACTAACTT
TGGGGGGGGGTACCCGGGAACTTTGACTGAAAAATTCTTACGCCCCCATA
ATCCTATCATTGGCAAATATTATCTTGCAAACTCTATTATACTTGGAAAC
TGGGGCTGCTTTGGTTA
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