EY753578

Overview
NameEY753578
Unique NameEY753578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753578_ssr343 microsatellite EY753578_ssr343:343..354. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.035e-12
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 1
Query:  424 VSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGG 768
            V+R  IS  + E+L ++GI  LFPIQ    D  + G D+ GRARTG GKTL F +PI++ +     + ++K G GR P  ++L PTR L +     +         L S C++GG
Sbjct:   86 VARLGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRI----LRHNEKNGSGRNPLAIILAPTRELARQ----VEKEFKESAPLDSLCVYGG 192          
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.765e-12
Identity = 46/130 (35.38%), Postives = 66/130 (50.77%), Query Frame = 1
Query:  421 AVSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGGPSYYGSEFKLKKGL 810
            A+S+  +   L E L+ +GI  LFPIQ       L G D+  RA+TG GKTL F +PI++ LT      +     GR P  LVL PTR L +        +      L++ C++GG SY   +  L +G+
Sbjct:  103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE---IKESAPYLSTVCVYGGVSYTIQQSALTRGV 229          
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.932e-12
Identity = 47/130 (36.15%), Postives = 67/130 (51.54%), Query Frame = 1
Query:  421 AVSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGGPSYYGSEFKLKKGL 810
            A++R  +   L   L+ +GI  LFPIQ       LDG DL  RA+TG GKTL F +P+++ L       S +   GR P VLVL PTR L +        +      L++ C++GG SY   +  L +G+
Sbjct:  105 AIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRR--GRIPRVLVLAPTRELAKQVEKE---IKESAPKLSTVCVYGGVSYNVQQNALSRGV 229          
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 39/115 (33.91%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  424 VSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGG 768
            V++  IS  +  +L S+GI  LFPIQ    +  + G D+ GRA+TG GKTL F +PIL+++     + ++K   G+ P  +VL PTR L +     +    +   ++ + C++GG
Sbjct:  100 VAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAI----IRHNEKNSPGKFPLAIVLAPTRELAKQ----VEREFSDSSNVETICVYGG 206          
The following BLAST results are available for this feature:
BLAST of EY753578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RH53_ORYSJ1.035e-1238.26DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sa... [more]
RH3_ARATH1.765e-1235.38DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
RH3_ORYSJ3.932e-1236.15DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sat... [more]
RH9_ORYSJ5.678e-1133.91DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-E04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753578 ID=EY753578; Name=EY753578; organism=Citrus sinensis; type=EST; length=895bp
CAACTCATTTCNCACATCAAATTTGTAGCAGGAGACGCCCTCTGCTGTTT
CTTTGTATCTCATTTTAATTTTTGTAACTTAACATAACCATTCATGCCTT
CGATCGCTTTGTTTGACGGAAAAGAAGTGAAAGACGAGAAGAAGATGAAT
AAGAAAATGGCTCTCAAGGACTTCGAAGAAACGGAGGCGGCGTTAACTGA
GAAGAGTTCGGATAAGAAGAAGAGCAAGAAGAAGGAGAGTAGTAAGAAGC
GGAAGGAATCGGAGATTGAGGAGGAGGAAGAGAGAAGCGAAACGAGCTCG
GAGTTAGGCGAGCCGGTGAATTTGAAATCGGAGAAGGAGAAAAAGAAGAA
GAAGAAAGCGAAAGTTGAGCCTGAGGCTGGAGTGGAANANCANGAGAGGG
GTGAAAGCGAACATCCGAATGCGGTTTCGAGGTTTAAAATATCGGTGCCA
TTAAGGGAAAAGCTCAAGTCCAAGGGGATTGAGTCTTTGTTTCCTATTCA
AGCTATGACTTTTGATATGGTTCTTGATGGCTCTGATTTANTCGGACGTG
CACGGACCGGTCAAGGTAAAACTTTANCCTTTGTGTTGCCAATTTTAGAG
TCTCTAACGAATGGGCCAACAAAAGCGTCCAAAAAGACTGGATATGGCAG
GGCTCCAGGGGTTTTGGTACTTTTGCCTACTAGGGGATTGGGCCAAACAG
GTTCATGAGGACTTTGGTGTCTAATGGCGGGGCAGGGGGACCTGACCTCT
TGTTGTTTATTTGGAGGACCTTCTTATTATGGCTCAGAGTTTAAATTAAA
GAAGGGGTTGGTGTAATTCTTGGAACCCCGGACCTTTTAGGGTCCCATTG
GGAGGGGCATTTTGATTGAGTTCTTTGAAATTGCGGTCCTTGAGG
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