EY753560

Overview
NameEY753560
Unique NameEY753560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9666 contig Csv1_Contig9666:717..1569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY753560 vs. ExPASy Swiss-Prot
Match: C3H42_ORYSJ (Zinc finger CCCH domain-containing protein 42 OS=Oryza sativa subsp. japonica GN=Os06g0519400 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 38/95 (40.00%), Postives = 49/95 (51.58%), Query Frame = 3 
Query:  525 PERPGQPECQFYMKTGDL*FGAVCRFHHPRERL------LPVPDC--------------VLSPIGLPLRXXETLCIFYSRYGICKFGSKCKFDHP 749
            P+RPG+ +C  Y++ G   +G  CRF+HP +RL       P   C               L+ +GLPLR    LC +Y   GICKFGS CKF HP
Sbjct:  118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHP 212
The following BLAST results are available for this feature:
BLAST of EY753560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
C3H42_ORYSJ4.712e-1240.00Zinc finger CCCH domain-containing protein 42 OS=O... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-C06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753560 ID=EY753560; Name=EY753560; organism=Citrus sinensis; type=EST; length=851bp
GCTGGGATTGCTGGAAGAGTCTCCTTAATGTTTTGGGCTATCCACTACGC
CCGAATGAGATTGAGTGTGCTTATTATCTAAGAACTGGACAATGCAAGTT
TGGAAGCACGTGTAAATTCCACCATCCTCAACCAAACAACATGATGGTTT
CTTTGCGAGGCTCTCCTGTTTATCCAACTGTTCAATCTCCGACTACTCCC
AGTCAACAGTCGTATGCTGGAGGAATTACGAACTGGTCTAGGGCATCTTT
TATTCCCAGCCCACGCTGGCAAGGTCCTTCAAGTTATGCACCGATGCTTC
TACCTCAGGGGATGGTATCAGTTCCTGGTTGGAACACATACAGTGGTCAG
CTGGGTTCAGTTTCTTCTTCTGAGAACCTGCAACAAACATCAGGAAACAG
TCAAATTTATGGAGCCTCACGCCAGACTGAACCCTCAAATTCAGGGTCTC
AAGGGACAATGTCTTCGTTTCGTTCTGGCTCTGTTCCCGTAGGGTTTTAT
GCATTGCAAAGGGAGAGTGTATTTCCAGAGAGACCTGGCCAGCCTGAATG
CCAGTTTTACATGAAGACTGGAGATTTGTAGTTTGGTGCTGTTTGTAGGT
TCCATCATCCAAGAGAAAGACTACTCCCTGTTCCAGACTGTGTATTGAGT
CCCATAGGTCTACCACTACGTNCGGNAGAAACCTTGTGCATCTTCTACTC
TCGTTATGGCATATGCAAGTTTGGGTCAAAGTGCAAGTTTGATCACCCAT
GGGAAATTTCACATACAATCTCTCTGCATTATCTTCAGCTGATGCCCGGG
CCGACATTTTTGGGGTCATATCTGCACTTNGGCATAAAATTATACGCGGA
G
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