EY753556

Overview
NameEY753556
Unique NameEY753556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753556_ssr538 microsatellite EY753556_ssr538:538..549. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: CDC42_CANAL (Cell division control protein 42 homolog OS=Candida albicans GN=CDC42 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.295e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1
Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            IKCV V DGAVGKTC+L SY ++ FP DYVPTVFDN +  V++G  P    ++DT G
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTSKFPADYVPTVFDNYAVTVMIGDEPFTLGLFDTAG 60          
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RACB_ENTHI (Rho-related protein racB (Fragment) OS=Entamoeba histolytica GN=RACB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1
Query:  262 GAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            G VGKTC+L SY +N FPT+YVPTVFDN SA V+V   P+N  +WDT G
Sbjct:    3 GGVGKTCLLVSYTTNAFPTEYVPTVFDNYSATVMVDSRPINLGLWDTAG 51          
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RHOJ_MOUSE (Rho-related GTP-binding protein RhoJ OS=Mus musculus GN=Rhoj PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  229 SRFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            +R +KCV V DGAVGKTC+L SYA++ FP +YVPTVFD+ +  V VGG      ++DT G
Sbjct:   19 NRILKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAG 78          
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  232 RFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            R +K V V DGAVGKTC+L SY +N FP +Y+PTVF+N ++++VV    +N  +WDT G
Sbjct:    2 RPVKLVIVGDGAVGKTCMLISYTTNAFPNEYIPTVFENYNSSLVVDDVKINLGLWDTAG 60          
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RHOQ_RAT (Rho-related GTP-binding protein RhoQ OS=Rattus norvegicus GN=Rhoq PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            +KCV V DGAVGKTC+L SYA++ FP +YVPTVFD+ + +V VGG      ++DT G
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 66          
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RHOQ_MOUSE (Rho-related GTP-binding protein RhoQ OS=Mus musculus GN=Rhoq PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            +KCV V DGAVGKTC+L SYA++ FP +YVPTVFD+ + +V VGG      ++DT G
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 66          
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RHOQ_HUMAN (Rho-related GTP-binding protein RhoQ OS=Homo sapiens GN=RHOQ PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            +KCV V DGAVGKTC+L SYA++ FP +YVPTVFD+ + +V VGG      ++DT G
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 66          
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RHOJ_HUMAN (Rho-related GTP-binding protein RhoJ OS=Homo sapiens GN=RHOJ PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.091e-12
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  232 RFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            + +KCV V DGAVGKTC+L SYA++ FP +YVPTVFD+ +  V VGG      ++DT G
Sbjct:   20 KMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAG 78          
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RHOU_MOUSE (Rho-related GTP-binding protein RhoU OS=Mus musculus GN=Rhou PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  232 RFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            R +KCV V DGAVGKT ++ SY +N +PT+Y+PT FDN SA V V G PV   + DT G
Sbjct:   51 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAG 109          
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RHOU_HUMAN (Rho-related GTP-binding protein RhoU OS=Homo sapiens GN=RHOU PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  232 RFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            R +KCV V DGAVGKT ++ SY +N +PT+Y+PT FDN SA V V G PV   + DT G
Sbjct:   48 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAG 106          
The following BLAST results are available for this feature:
BLAST of EY753556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CDC42_CANAL6.295e-1357.89Cell division control protein 42 homolog OS=Candid... [more]
RACB_ENTHI1.832e-1263.27Rho-related protein racB (Fragment) OS=Entamoeba h... [more]
RHOJ_MOUSE3.124e-1255.00Rho-related GTP-binding protein RhoJ OS=Mus muscul... [more]
RECG_ENTHI5.329e-1252.54Rho-related protein racG OS=Entamoeba histolytica ... [more]
RHOQ_RAT6.960e-1256.14Rho-related GTP-binding protein RhoQ OS=Rattus nor... [more]
RHOQ_MOUSE6.960e-1256.14Rho-related GTP-binding protein RhoQ OS=Mus muscul... [more]
RHOQ_HUMAN6.960e-1256.14Rho-related GTP-binding protein RhoQ OS=Homo sapie... [more]
RHOJ_HUMAN9.091e-1254.24Rho-related GTP-binding protein RhoJ OS=Homo sapie... [more]
RHOU_MOUSE1.187e-1155.93Rho-related GTP-binding protein RhoU OS=Mus muscul... [more]
RHOU_HUMAN1.187e-1155.93Rho-related GTP-binding protein RhoU OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-C02-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753556 ID=EY753556; Name=EY753556; organism=Citrus sinensis; type=EST; length=778bp
CTGTCTCTTTGCAGATTAGGGTTTAATTACCTTCGCTACCTTAATTCAAG
ACTTCTTTTCACTCAATTCCTAAGCTCCCGTTGACGAACTGAGTTGTTCT
CTTTTGGTCTTCGAAATGAGTGAAGTCTGAGGCAAGAAGTGTACGTAAAG
AACCTGAGCAGTCTTCCAAGGGCATTGTCGGAATAAGCTGGGGAAGAGAA
TAGAGATCTGGTGGCGCAAATGAGCGCGTCGAGGTTCATAAAGTGCGTCA
CTGTCTGTGACGGCGCCGTCGGAAAAACTTGCGTGCTTACTTCTTACGCC
AGCAACACTTTCCCAACGGACTATGTGCCAACTGTCTTTGACAATTTGAG
TGCGAATGTGGTTGTTGGTGGGAGTCCGGTCAACTCGTGGGTTTGGGACA
CTGTTGGTTTGTGAGATTCCCAGTGGTGGAGATCGNGGGTTTTTGTGGTA
GTTTTGCGGGTTACTTGGTTCGTGCTGCTTTCTCGGGCGTGTTGCGATTG
TTCTGGAGATTGTGTGCTTGGCGGCGTGCTTCGGGCCGCGGCGGCGGCGT
TTTTGGGCGGCGGGCGTGCATTTTTGTTTCCGTCTGTCGATATTGTTTTC
TGTGTGGCGCTCTGCCCCCCCCTCCCCTCCTTTCTCCGCCGGGGCGACGT
CATGTCCTGCCCCCCCCTCCTTCGCTCCGCCCGCCGCGCTCCCCGTGCTC
GNCGCNTTTCTGTACTTCCGTCCTCTCCCTCGGGAATTATTTAACTCCCT
TCTCTTTTTTCTTCCCTGTCTCGCCGCT
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