EY753554 | Citrus Genome Database

Overview


Name	EY753554
Unique Name	EY753554
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	857

Libraries


Library Name	Type
Sweet orange leaf, field plant A	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.348e-17
Identity = 64/179 (35.75%), Postives = 89/179 (49.72%), Query Frame = 2

Query:  197 AGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            A T+ ++ SA+ +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPE    N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P    TDPI            YPGG  FDPL
Sbjct:   44 ATTKKLTASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGS-FDPL 206

HSP 2 Score: 23.0978 bits (48), Expect = 3.348e-17
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3

Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  224 KNGRLAMFSMFGFFVQAIVTGKGPI 248

[Close]

BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.355e-17
Identity = 53/141 (37.59%), Postives = 73/141 (51.77%), Query Frame = 2

Query:  272 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKL-TGTDVGYPGGLWFDPL 667
            PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    +  +  L    D+ YPGG  FDPL
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRVAGEGPLGEAEDLLYPGGS-FDPL 198

HSP 2 Score: 23.8682 bits (50), Expect = 4.355e-17
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3

Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  216 KNGRLAMFSMFGFFVQAIVTGKGPL 240

[Close]

BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.662e-17
Identity = 58/173 (33.53%), Postives = 84/173 (48.55%), Query Frame = 2

Query:  197 AGTRSVSVSAAAADPNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVG------YPGGLWFDPL 667
            A  + VS S+     +R L+       PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V        +++ G  +G      YPGG  FDPL
Sbjct:   39 AKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAI-WA-----CQVVLMGAVE------GYRIAGGPLGEIVDPLYPGGS-FDPL 198

HSP 2 Score: 23.8682 bits (50), Expect = 5.662e-17
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3

Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  216 KNGRLAMFSMFGFFVQAIVTGKGPL 240

[Close]

BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.380e-17
Identity = 56/148 (37.84%), Postives = 74/148 (50.00%), Query Frame = 2

Query:  272 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+     SW+ AG        L+Y  + +         ++  ++I +G  EG R A    P    TDPI            YPGG  FDPL
Sbjct:   45 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGS-FDPL 177

HSP 2 Score: 23.8682 bits (50), Expect = 7.380e-17
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3

Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  195 KNGRLAMFSMFGFFVQAIVTGKGPL 219

[Close]

BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.244e-16
Identity = 52/139 (37.41%), Postives = 71/139 (51.08%), Query Frame = 2

Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L+Y  +   +    ++ I WA     A ++  G V    +       G D  YPGG  FDPL
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----AQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPL 197

HSP 2 Score: 23.0978 bits (48), Expect = 1.244e-16
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3

Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPI 239

[Close]

BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.244e-16
Identity = 62/174 (35.63%), Postives = 85/174 (48.85%), Query Frame = 2

Query:  203 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            T+ VS  +    P+R  +   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P    TDPI            YPGG  FDPL
Sbjct:   38 TKQVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGS-FDPL 195

HSP 2 Score: 23.8682 bits (50), Expect = 1.244e-16
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3

Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  213 KNGRLAMFSMFGFFVQAIVTGKGPL 237

[Close]

BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.618e-16
Identity = 51/138 (36.96%), Postives = 68/138 (49.28%), Query Frame = 2

Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG   +      +     L   + I   WA       +I+   V   P+       G D  YPGG  FDPL
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLG-----EGLDKIYPGGA-FDPL 197

HSP 2 Score: 23.0978 bits (48), Expect = 1.618e-16
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3

Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPI 239

[Close]

BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.103e-16
Identity = 61/161 (37.89%), Postives = 80/161 (49.69%), Query Frame = 2

Query:  242 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            +RPL+   F GS PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P     DPI            YPGG  FDPL
Sbjct:   53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--GPLGEVEDPI------------YPGGS-FDPL 197

HSP 2 Score: 23.0978 bits (48), Expect = 2.103e-16
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3

Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPI 239

[Close]

BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.105e-16
Identity = 61/174 (35.06%), Postives = 86/174 (49.43%), Query Frame = 2

Query:  203 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            ++SVS  +    P+R  +   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P    TDPI            YPGG  FDPL
Sbjct:   30 SKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPI------------YPGGS-FDPL 187

HSP 2 Score: 23.8682 bits (50), Expect = 2.105e-16
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3

Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  205 KNGRLAMFSMFGFFVQAIVTGKGPL 229

[Close]

BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.732e-16
Identity = 57/165 (34.55%), Postives = 81/165 (49.09%), Query Frame = 2

Query:  206 RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            + VS S+    PNR  +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+  G        L+Y  + + +    ++ I WA       ++  G V    +  +      D  YPGG  FDPL
Sbjct:   43 KPVSSSSPWYGPNRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGEPLGEVVDPLYPGGS-FDPL 199

HSP 2 Score: 23.8682 bits (50), Expect = 2.732e-16
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3

Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPL 241

The following BLAST results are available for this feature:

BLAST of EY753554 vs. ExPASy Swiss-Prot

BLAST of EY753554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69


Match Name	E-value	Identity	Description
CB2B_PINSY	3.348e-17	35.75	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB21_SINAL	4.355e-17	37.59	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB21_WHEAT	5.662e-17	33.53	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_SOYBN	7.380e-17	37.84	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]
CB26_PETSP	1.244e-16	37.41	Chlorophyll a-b binding protein 37, chloroplastic ...	[more]
CB23_SOYBN	1.244e-16	35.63	Chlorophyll a-b binding protein 3, chloroplastic O...	[more]
CB23_TOBAC	1.618e-16	36.96	Chlorophyll a-b binding protein 36, chloroplastic ...	[more]
CB23_POLMU	2.103e-16	37.89	Chlorophyll a-b binding protein type 1 member F3, ...	[more]
CB21_CUCSA	2.105e-16	35.06	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB23_NICPL	2.732e-16	34.55	Chlorophyll a-b binding protein C, chloroplastic O...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS12-C1-001-004-B12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY753554 ID=EY753554; Name=EY753554; organism=Citrus sinensis; type=EST; length=857bp
TTACACTCACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTGCCTGG
TAGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCA
TCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTC
TTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGG
GAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCT
CTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCC
CGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGC
TGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTA
GGAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCT
CAACACTCCATCCTGGTACACAGCTGGGGAGCTAGAGTACTTCACAGACA
CCACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGC
AGACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGAT
CTTTCCCCAACACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGC
TTTGGTTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAGGTAAAGG
AGCTGAGGACTAAGGAGACAAGAATGGAANATTGCCTATGTTGGCTGGGA
TGGGTGCTNGGGTCCANCACATTTACCCCGGCCCCGGCCCATTGACATCT
CATTGCTCACCTGGCTGATCCTGGCATGCCACCGTTTTTGCTGCTCACCC
CCAGTGA