EY753554

Overview
NameEY753554
Unique NameEY753554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.733e-16
Identity = 52/147 (35.37%), Postives = 73/147 (49.66%), Query Frame = 2
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L+Y  +           ++  +++ +G+ EG R         V   P+       G D  YPGG  FDPL
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------VGGGPLG-----EGLDKIYPGGA-FDPL 197          

HSP 2 Score: 23.0978 bits (48), Expect = 2.733e-16
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPI 239          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.743e-16
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L+Y  +   +    ++ I WA     + ++  G V    +       G D  YPGG  FDPL
Sbjct:   38 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----SQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPL 169          

HSP 2 Score: 23.0978 bits (48), Expect = 2.743e-16
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  187 KNGRLAMFSMFGFFVQAIVTGKGPI 211          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16
Identity = 55/146 (37.67%), Postives = 69/146 (47.26%), Query Frame = 2
Query:  254 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA--GELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            WFPG   P  LDGS PGDFGFDPLGL + PE      +SEI HCRWAML   G+ +PE L     +    W     G+  Y      + +  T+  +E + I +AE +R         +  DP             YPGG  FDPL
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TMEKDP---------EKKKYPGGA-FDPL 175          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.610e-16
Identity = 63/177 (35.59%), Postives = 85/177 (48.02%), Query Frame = 2
Query:  200 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            G +SV+ S  +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG               +L +      ++  ++I +G  EG R A    P    TDPI            YPGG  FDPL
Sbjct:   50 GKKSVAASIDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG--GPLGEVTDPI------------YPGGN-FDPL 210          

HSP 2 Score: 23.0978 bits (48), Expect = 4.610e-16
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  228 KNGRLAMFSMFGFFVQAIVTGKGPI 252          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.616e-16
Identity = 61/176 (34.66%), Postives = 88/176 (50.00%), Query Frame = 2
Query:  194 TAGT-RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVG------YPGGLWFDPL 667
            TAG  ++V  S+    P+R  +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V        +++ G  +G      YPGG  FDPL
Sbjct:   38 TAGKPKTVQSSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVILMGAVE------GYRIAGGPLGEVVDPLYPGGS-FDPL 199          

HSP 2 Score: 23.8682 bits (50), Expect = 4.616e-16
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPL 241          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.618e-16
Identity = 54/161 (33.54%), Postives = 76/161 (47.20%), Query Frame = 2
Query:  239 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+K G+      W+ AG                L +      ++ V+++ +G+ EG R         V   P+       G D  YPGG  FDPL
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLG-----EGLDKVYPGGA-FDPL 195          

HSP 2 Score: 23.0978 bits (48), Expect = 4.618e-16
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  213 KNGRLAMFSMFGFFVQAIVTGKGPI 237          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.618e-16
Identity = 54/161 (33.54%), Postives = 76/161 (47.20%), Query Frame = 2
Query:  239 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+K G+      W+ AG                L +      ++ V+++ +G+ EG R         V   P+       G D  YPGG  FDPL
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLG-----EGLDKVYPGGA-FDPL 195          

HSP 2 Score: 23.0978 bits (48), Expect = 4.618e-16
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  213 KNGRLAMFSMFGFFVQAIVTGKGPI 237          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.444e-16
Identity = 55/153 (35.95%), Postives = 74/153 (48.37%), Query Frame = 2
Query:  239 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG        L+Y  +   +    ++ I WA       ++  G V    +       G D  YPGG  FDPL
Sbjct:   51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAI-WA-----CQVVLMGAVEGYRVGGGPLGEGLDQLYPGGA-FDPL 196          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.000e-16
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G +    +        TD  YPGG  FDPL
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAIEGYRVAGGPLGEVTDPLYPGGS-FDPL 199          

HSP 2 Score: 23.8682 bits (50), Expect = 6.000e-16
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPL 241          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.788e-16
Identity = 62/177 (35.03%), Postives = 85/177 (48.02%), Query Frame = 2
Query:  200 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            G +SV+ S  +    P+R ++   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG               +L +      ++  ++I +G  EG R A    P    TDPI            YPGG  FDPL
Sbjct:   50 GRKSVAASIDSPWYGPDRVMYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG--GPLGEVTDPI------------YPGGN-FDPL 210          

HSP 2 Score: 23.0978 bits (48), Expect = 7.788e-16
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  228 KNGRLAMFSMFGFFVQAIVTGKGPI 252          
The following BLAST results are available for this feature:
BLAST of EY753554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB24_SOLLC2.733e-1635.37Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB25_SOLLC2.743e-1636.69Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB121_HORVU3.191e-1637.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2A_PINSY4.610e-1635.59Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2A_SPIOL4.616e-1634.66Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSJ4.618e-1633.54Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.618e-1633.54Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SILPR5.444e-1635.95Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB27_TOBAC6.000e-1635.97Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB2A_PYRPY7.788e-1635.03Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-B12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753554 ID=EY753554; Name=EY753554; organism=Citrus sinensis; type=EST; length=857bp
TTACACTCACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTGCCTGG
TAGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCA
TCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTC
TTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGG
GAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCT
CTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCC
CGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGC
TGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTA
GGAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCT
CAACACTCCATCCTGGTACACAGCTGGGGAGCTAGAGTACTTCACAGACA
CCACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGC
AGACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGAT
CTTTCCCCAACACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGC
TTTGGTTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAGGTAAAGG
AGCTGAGGACTAAGGAGACAAGAATGGAANATTGCCTATGTTGGCTGGGA
TGGGTGCTNGGGTCCANCACATTTACCCCGGCCCCGGCCCATTGACATCT
CATTGCTCACCTGGCTGATCCTGGCATGCCACCGTTTTTGCTGCTCACCC
CCAGTGA
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