EY753554

Overview
NameEY753554
Unique NameEY753554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.248e-15
Identity = 52/140 (37.14%), Postives = 69/140 (49.29%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKL-TGTDVGYPGGLWFDPL 667
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG  + F+D         +L   + I   WA       +I  G V    +     L    D+ YPGG  FDPL
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPL 199

HSP 2 Score: 23.0978 bits (48), Expect = 8.248e-15
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3 
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPI 241
[Close]
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.248e-15
Identity = 52/140 (37.14%), Postives = 69/140 (49.29%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKL-TGTDVGYPGGLWFDPL 667
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG  + F+D         +L   + I   WA       +I  G V    +     L    D+ YPGG  FDPL
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPL 199

HSP 2 Score: 23.0978 bits (48), Expect = 8.248e-15
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3 
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPI 241
[Close]
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.248e-15
Identity = 51/145 (35.17%), Postives = 73/145 (50.34%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVG------YPGGLWFDPL 667
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V        +++ G  +G      YPGG  FDPL
Sbjct:   69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVE------GYRIAGGPLGEVVDPLYPGGS-FDPL 200

HSP 2 Score: 23.8682 bits (50), Expect = 8.248e-15
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3 
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  218 KNGRLAMFSMFGFFVQAIVTGKGPL 242
[Close]
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.261e-15
Identity = 55/162 (33.95%), Postives = 78/162 (48.15%), Query Frame = 2 
Query:  197 AGTRSVSVSAAAA------DPNRPLWF-PGST-PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL-TKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 607
            AGT+    + A +       P+R  W  P ST  P +L G  PGD+G+D  GL +DPET +   + E++H RWA+LGA GI  PELL T  G+    P W+ AG        L+Y          +      V+++ +G  EG R      P     DP++P
Sbjct:   22 AGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNG--GPAGEGLDPLYP 181

HSP 2 Score: 23.0978 bits (48), Expect = 8.261e-15
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3 
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  206 KNGRLAMFSCFGFFVQAIVTGKGPI 230
[Close]
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.295e-15
Identity = 51/145 (35.17%), Postives = 73/145 (50.34%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVG------YPGGLWFDPL 667
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V        +++ G  +G      YPGG  FDPL
Sbjct:   29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVE------GYRIAGGPLGEVVDPLYPGGS-FDPL 160

HSP 2 Score: 23.8682 bits (50), Expect = 8.295e-15
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3 
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  178 KNGRLAMFSMFGFFVPAIVTGKGPL 202
[Close]
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.072e-14
Identity = 50/145 (34.48%), Postives = 72/145 (49.66%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVG------YPGGLWFDPL 667
            P +L G  PGD+G+D   L +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V        +++ G  +G      YPGG  FDPL
Sbjct:   68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVE------GYRVAGGPLGEVVDPLYPGGS-FDPL 199

HSP 2 Score: 23.8682 bits (50), Expect = 1.072e-14
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3 
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPL 241
[Close]
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.072e-14
Identity = 52/147 (35.37%), Postives = 72/147 (48.98%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +        +++  ++I +G  EG R A    P     DP+            YPGG  FDPL
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG--GPLGEIVDPL------------YPGGS-FDPL 196

HSP 2 Score: 23.8682 bits (50), Expect = 1.072e-14
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3 
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  214 KNGRLAMFSMFGFFVQAIVTGKGPL 238
[Close]
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.341e-14
Identity = 57/161 (35.40%), Postives = 78/161 (48.45%), Query Frame = 2 
Query:  239 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG        L+Y  +           ++  +++ +G+ EG R         V   P+       G D  YPGG  FDPL
Sbjct:   52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR---------VGGGPLG-----EGLDPLYPGGA-FDPL 197
[Close]
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.809e-14
Identity = 50/145 (34.48%), Postives = 71/145 (48.97%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVG------YPGGLWFDPL 667
            P +L G  P D+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + GI      W+ AG        L+Y  + + +    ++ I WA       ++  G V        +++ G  +G      YPGG  FDPL
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVE------GYRVAGGPLGEVIDPLYPGGS-FDPL 199

HSP 2 Score: 23.8682 bits (50), Expect = 1.809e-14
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3 
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPL 241
[Close]
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.351e-14
Identity = 50/152 (32.89%), Postives = 69/152 (45.39%), Query Frame = 2 
Query:  239 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            P+RP +        P +L G  PGD+G+D   + +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG   +      +     L   + I   WA       ++  G +    +       G D   PGG  FDPL
Sbjct:   53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWA-----CQVVLMGLIEGYRVGGGTLGEGLDPLLPGGA-FDPL 198

HSP 2 Score: 23.0978 bits (48), Expect = 2.351e-14
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3 
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GP+
Sbjct:  216 KNGRLAMFSMFGFFVQAIVTGKGPI 240
The following BLAST results are available for this feature:
BLAST of EY753554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB22_ARATH8.248e-1537.14Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH8.248e-1537.14Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB28_PEA8.248e-1535.17Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB2_CHLMO8.261e-1533.95Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PEA8.295e-1535.17Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB25_PETSP1.072e-1434.48Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_APIGR1.072e-1435.37Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA1.341e-1435.40Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_PETSP1.809e-1434.48Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_PINTH2.351e-1432.89Chlorophyll a-b binding protein type I, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-B12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753554 ID=EY753554; Name=EY753554; organism=Citrus sinensis; type=EST; length=857bp
TTACACTCACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTGCCTGG
TAGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCA
TCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTC
TTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGG
GAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCT
CTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCC
CGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGC
TGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTA
GGAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCT
CAACACTCCATCCTGGTACACAGCTGGGGAGCTAGAGTACTTCACAGACA
CCACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGC
AGACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGAT
CTTTCCCCAACACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGC
TTTGGTTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAGGTAAAGG
AGCTGAGGACTAAGGAGACAAGAATGGAANATTGCCTATGTTGGCTGGGA
TGGGTGCTNGGGTCCANCACATTTACCCCGGCCCCGGCCCATTGACATCT
CATTGCTCACCTGGCTGATCCTGGCATGCCACCGTTTTTGCTGCTCACCC
CCAGTGA
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