EY753554

Overview
NameEY753554
Unique NameEY753554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.969e-14
Identity = 50/148 (33.78%), Postives = 71/148 (47.97%), Query Frame = 2
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K +G+    P W+ AG        L+Y  +   +           +++ +G  EG R   +   G              G D+ YPGG +FDPL
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVG-------------EGNDL-YPGGQYFDPL 200          

HSP 2 Score: 23.8682 bits (50), Expect = 3.969e-14
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  218 KNGRLAMFSMFGFFVQAIVTGKGPL 242          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14
Identity = 49/139 (35.25%), Postives = 67/139 (48.20%), Query Frame = 2
Query:  239 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGWAE------GRRWADIIKPG 580
            P+R ++ P      S  PE+L+G + GD+G+DP GLG  PE        E++H RWAMLGAAG  IPE L K G    P   W+  G L    +T   F            + E++ +G AE      G  + D + PG
Sbjct:   65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPG 203          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.159e-14
Identity = 55/172 (31.98%), Postives = 80/172 (46.51%), Query Frame = 2
Query:  194 TAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSW-------YTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVG------YPGGLWFDPL 667
            TA T+ V       D  + L       P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W       ++ G L+Y  + + +    ++ I WA       ++  G V        +++ G  +G      YPGG  FDPL
Sbjct:   38 TAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAI-WA-----CQVVLMGAVE------GYRVAGGPLGEVVDPLYPGGS-FDPL 196          

HSP 2 Score: 23.8682 bits (50), Expect = 5.159e-14
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  214 KNGRLAMFSMFGFFVQAIVTGKGPL 238          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.700e-14
Identity = 48/145 (33.10%), Postives = 70/145 (48.28%), Query Frame = 2
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVG------YPGGLWFDPL 667
            P +L G  PGD+G+D  GL +DP T   N + E++HCRW MLGA G   PEL  + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V        +++ G  +G      YPGG  FDPL
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVE------GYRVAGGPLGEVIDPLYPGGS-FDPL 198          

HSP 2 Score: 23.8682 bits (50), Expect = 6.700e-14
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  216 KNGRLAMFSMFGFFVQAIVTGKGPL 240          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.707e-14
Identity = 49/148 (33.11%), Postives = 70/148 (47.30%), Query Frame = 2
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K   ++   P W+ AG        L+Y  +   +           +++ +G  EG R   +   G              G D+ YPGG +FDPL
Sbjct:   64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG-------------EGNDL-YPGGQYFDPL 197          

HSP 2 Score: 23.8682 bits (50), Expect = 8.707e-14
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L M +  G  V  I  G GPL
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPL 239          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.472e-13
Identity = 49/142 (34.51%), Postives = 69/142 (48.59%), Query Frame = 2
Query:  239 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLF--------IVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 607
            PNR  W   +  +  P +L G  PGD+G+D  GL +DPET +   + E++H RWAMLGA G   PELL K G       W+ AG        L+Y  + + +          V++I +G  EG R      P     DP++P
Sbjct:   39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNG--GPAGEGLDPLYP 178          

HSP 2 Score: 20.4014 bits (41), Expect = 1.472e-13
Identity = 10/25 (40.00%), Postives = 12/25 (48.00%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGPL 794
            KNG L   +  G  V  I  G GP+
Sbjct:  203 KNGRLASFSMFGFFVQAIVTGKGPV 227          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.472e-13
Identity = 60/181 (33.15%), Postives = 86/181 (47.51%), Query Frame = 2
Query:  194 TAGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            T   R  +V  AA +   P+R  +   F  +  PE+L G  PGD+G+D  GL +DP+T     + E++H RWA+LGA GI  PELL++  G+    P W+ AG        L Y  + + +          V+++ +G AE  R A+    G            L   D  YPGG  FDPL
Sbjct:   18 TRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-ANGGSEGF-----------LDDLDTLYPGGP-FDPL 185          

HSP 2 Score: 24.2534 bits (51), Expect = 1.472e-13
Identity = 14/31 (45.16%), Postives = 16/31 (51.61%), Query Frame = 3
Query:  720 KNGXLPMLAGMGAXVXHIYPGPGP---LTSH 803
            KNG L M + +G  V  I  G GP   LT H
Sbjct:  203 KNGRLAMFSCLGFFVQAIVTGKGPVQNLTDH 233          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.228e-12
Identity = 34/81 (41.98%), Postives = 43/81 (53.09%), Query Frame = 2
Query:  191 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL 433
            A   T     +++ A   R LWFP   PP +L G   GD GFDP GL +DP T      +E+ HCR +ML   G  +PELL
Sbjct:  353 ANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL 433          

HSP 2 Score: 70.0922 bits (170), Expect = 1.812e-11
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 2
Query:  242 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGE 481
            + PLWFP +  P WL+G   GD GFDP GL +DP+T      +E+ H R AML   G  +P+ L K GI     WY A +
Sbjct:    1 SHPLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQ 74          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  269 TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 478
            +PP +L G  PGD+G+D  GL +DPET   N + E++HCRWA+    G   PELL + G+      W+ AG
Sbjct:   63 SPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAG 133          
The following BLAST results are available for this feature:
BLAST of EY753554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB23_HORVU3.969e-1433.78Chlorophyll a-b binding protein of LHCII type III,... [more]
CB26_ARATH5.095e-1435.25Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB22_HORVU5.159e-1431.98Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PETSP6.700e-1433.10Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_SOLLC8.707e-1433.11Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_CHLRE1.472e-1334.51Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE1.472e-1333.15Chlorophyll a-b binding protein of LHCII type I, c... [more]
LH18_EUGGR6.228e-1241.98Light-harvesting complex I LH38 proteins (Fragment... [more]
CB48_MAIZE1.062e-1143.66Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-B12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753554 ID=EY753554; Name=EY753554; organism=Citrus sinensis; type=EST; length=857bp
TTACACTCACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTGCCTGG
TAGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCA
TCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTC
TTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGG
GAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCT
CTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCC
CGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGC
TGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTA
GGAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCT
CAACACTCCATCCTGGTACACAGCTGGGGAGCTAGAGTACTTCACAGACA
CCACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGC
AGACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGAT
CTTTCCCCAACACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGC
TTTGGTTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAGGTAAAGG
AGCTGAGGACTAAGGAGACAAGAATGGAANATTGCCTATGTTGGCTGGGA
TGGGTGCTNGGGTCCANCACATTTACCCCGGCCCCGGCCCATTGACATCT
CATTGCTCACCTGGCTGATCCTGGCATGCCACCGTTTTTGCTGCTCACCC
CCAGTGA
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