EY753543

Overview
NameEY753543
Unique NameEY753543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY753543 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.339e-12
Identity = 67/216 (31.02%), Postives = 94/216 (43.52%), Query Frame = 3 
Query:   69 EVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLR-PVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIGLND---VVRWVTFHSGMILVICLK------L*PCRS*RDPQLGSLIGQYVF------------SCRFEIEPLDEVLQ 650
            EVW  N + E   IR+ +   N IA+DTEFPG +   P+ A   I    Y+ +K NVD   LIQLGLT   +       G  K   W+ N  +FN    +    S+  L   G+D  K  E+GI +  F    M     LN+    +RWVTF         LK      L       D  +  L+G++V+            S RF ++ + +VLQ
Sbjct:    4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEI---RYRDMKFNVDNTHLIQLGLTLFGK-------GITK--TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEF---FMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQ 204
The following BLAST results are available for this feature:
BLAST of EY753543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CAF1E_ARATH6.339e-1231.02Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-B01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753543 ID=EY753543; Name=EY753543; organism=Citrus sinensis; type=EST; length=868bp
TAGGTTTAAAATTTGCTGTCTTGGAAATGTCGGCTTTGCCTAAGGGGGGC
GATGAAATTCAAATTCGAGAGGTGTGGAATGATAATCTCGAAGAGGAATT
TGCTTTAATTCGTGAAATTGTTGATAAGTATAACTATATAGCCATGGATA
CGGAGTTCCCAGGCGTGGTTTTGCGTCCCGTGGGAGCTTTTAAGAATATT
AATGATTATAACTACCAAACGTTGAAGGATAACGTCGACATGTTGAAGTT
GATTCAATTGGGTTTAACATTTTCGGATGAAAATGGGAATTTGCCTACTT
GTGGGACTGACAAGTTTTGCATTTGGCAATTCAACTTTCGCGAGTTTAAT
TTAATTGATGATATTTTTGCTAGTGATTCAGTTGAGTTGCTGCATCAGTG
TGGGATTGATTTTAAGAAGAATAATGAGAAGGGTATTGATGTGAACCGCT
TTGGTGAGCTTTTGATGTCGTCGGGGATTGGGCTGAATGATGTTGTTCGT
TGGGTCACGTTTCACAGTGGGATGATTTTGGTTATTTGCCTTAAGTTGTG
ACCTTGCCGGAGTTAACGCGATCCCCAGCTGGGTTCTTTGATTGGACAAT
ATGTATTTTCCTGTCGTTTTGAAATCGAACCTTTGGATGAAGTTTTGCAA
CAACCCTCTTGTGTGGGTCACCAAGCCTGCGGGTTTGTTGGAGGGAGACC
CAATTGGGTATTGTTATCCCCCCGGCTCAAATTCTTCCGTACTTCCTCCC
CATTTAGGAACTTCGCGAAACCTTTTTAACTGTTGCCACAAATATCTGCT
GGTCTCTTTTGGTTTCCGTGCTCAATTCACCGCTCTCTCACCACAATACT
GCGAAAAGGAAACGAAAA
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