EY753516

Overview
NameEY753516
Unique NameEY753516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:19..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753516 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.284e-23
Identity = 76/223 (34.08%), Postives = 113/223 (50.67%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHXEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGFEADYLEE 763
            +++V ++RRREGKTD+R R+ L+   K        R V R +  ++TAQ++S    GD+VL SA+  EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F  LKG+LD G+DIPH +           ++ AE  R  + G HV  Y  +L ED  + Y+  F +Y+++G   + L E
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGD-----------EIIAEEER--LNGTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPE 181          
BLAST of EY753516 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.895e-23
Identity = 76/232 (32.76%), Postives = 119/232 (51.29%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHXEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGFE----ADYLEELYRKV 778
            +++V ++RRREGKTD+R R+ L+   K        R V R +  ++ AQ+++    GD+VL SA++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F  LKG+LD G+DIPH ++  A    D ++L+         G HV  Y  +L ED  + Y+  F +Y+++G       +++EEL  K+
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190          
BLAST of EY753516 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.895e-23
Identity = 76/232 (32.76%), Postives = 119/232 (51.29%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHXEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGFE----ADYLEELYRKV 778
            +++V ++RRREGKTD+R R+ L+   K        R V R +  ++ AQ+++    GD+VL SA++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F  LKG+LD G+DIPH ++  A    D ++L+         G HV  Y  +L ED  + Y+  F +Y+++G       +++EEL  K+
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190          
BLAST of EY753516 vs. ExPASy Swiss-Prot
Match: RL18_AERPE (50S ribosomal protein L18P OS=Aeropyrum pernix GN=rpl18p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.087e-23
Identity = 79/233 (33.91%), Postives = 109/233 (46.78%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHXEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGFEADYLEELYRKVHAAI 790
            RY+V  +RRREGKT+Y  R RL+   K        R  VR +N+ +  Q + A I GD V+A+A++ EL  ++G +    N  AAY TG L   R L+                          +    A+LDVGL K   G+RVF ALKG+LD G++IPH E+   G        D  V  +     H+A +   L E+  E YQ  F  Y+ RG   + L     +V  AI
Sbjct:    6 RYRVPLRRRREGKTNYYRRFRLVKSGKP-------RMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKFGWKGDGNNTCAAYLTGYLAGLRALE--------------------------KGVREAVLDVGLHKPVKGSRVFAALKGALDAGVEIPHSEEILPG--------DERVRCE-----HIAQWAEALKEENAELYQRQFSRYLDRGLNPEELPGHVEEVKKAI 192          
BLAST of EY753516 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.133e-22
Identity = 77/232 (33.19%), Postives = 117/232 (50.43%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHXEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGFEADYLEELYRKVHAAI 790
            +++V ++RRREGKTD+R R+ L+   K        R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F  LKG+LD G+DIP  E+  A    D ++L+         G H+  Y   L EDE E Y+  F +Y+++G   + L E + ++   I
Sbjct:    6 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLN---------GTHIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 190          
BLAST of EY753516 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.133e-22
Identity = 77/232 (33.19%), Postives = 117/232 (50.43%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHXEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGFEADYLEELYRKVHAAI 790
            +++V ++RRREGKTD+R R+ L+   K        R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F  LKG+LD G+DIP  E+  A    D ++L+         G H+  Y   L EDE E Y+  F +Y+++G   + L E + ++   I
Sbjct:    8 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLN---------GTHIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 192          
BLAST of EY753516 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.480e-22
Identity = 80/229 (34.93%), Postives = 110/229 (48.03%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHXEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGFEADYLEELYRKV 778
            RY+V  +RRREGKT+Y  R +++            RFVVR T K I  QI++A   GDI +A+A++ EL  +YG   GL N  AAY TGLL A R LK               G  Y+V             D+GL   T G +VF A+K + D GL +P  E+      +             I G H+A++ + L E  PE Y+  F +YI RGF+   L   + +V
Sbjct:    6 RYKVPKRRRREGKTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK--------------AGIKYAVP------------DIGLHVPTRGAKVFAAIKAANDVGLKVPVGEEVVPSDDR-------------IRGEHIASWAKMLQEASPEAYERFFSKYISRGFDPTQLPTHFEEV 188          
BLAST of EY753516 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.525e-22
Identity = 69/163 (42.33%), Postives = 89/163 (54.60%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHXEK 583
            RY V ++RRREG+T+Y AR RL+   K        R VVR TN+ I  QII+A + GD    +A + EL ++G E  L N  AAY TG+LLA R LK     A  EG                     A+LD+GL + T G RVF ALKG+++ G DIPH E+
Sbjct:    6 RYFVAFRRRREGRTNYHARTRLVVATKP-------RMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK-----AGQEG---------------------AILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135          
BLAST of EY753516 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.625e-22
Identity = 72/232 (31.03%), Postives = 108/232 (46.55%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHXEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGFEADYLEELYRKVHAAI 790
            RY+V ++RRREG T+YR R +L+   K        R VVR TNK + AQI+ A   GD  +       L ++G +    N +AAY  GL++             Y+   +   E              A+LD+GL + T G RVF  +KG +D G+++PH E             +     + I G HVA Y + L E+ PE Y++ F  Y++RG   + L   + +V   I
Sbjct:    6 RYKVPFRRRREGVTNYRKRRKLLLSRKP-------RLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGE-------------EVVPSEERIRGEHVAEYAKRLKEEAPEAYKARFSRYLQRGLPPEELPSHFEEVKKKI 191          
BLAST of EY753516 vs. ExPASy Swiss-Prot
Match: RL18_NANEQ (50S ribosomal protein L18P OS=Nanoarchaeum equitans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.625e-22
Identity = 74/236 (31.36%), Postives = 110/236 (46.61%), Query Frame = 2
Query:   83 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHXEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGFEADYLEELYRKVHAAI 790
            A+  RY+V ++RRREGKT YR R++L+   K        R VVR  N +I AQ++     GD V+ + +++ L +YG +    N  +AY  GL+     LK                          R    A+LD+G  K+T GN ++  LKG+LD GL+IPH E       +             I G H+A Y + L E+E E Y+  F  Y+K G + + L   + +V   I
Sbjct:    2 AHGPRYRVPFRRRREGKTVYRKRLKLLLSGKP-------RLVVRRFNSNILAQLVEYDPKGDRVIFTIHSNVLKKYGWKGHRGNLPSAYLVGLIAGYEALK--------------------------RGYKEAVLDIGRYKSTKGNALYAVLKGALDAGLNIPHSETILPSEDR-------------IRGEHIANYAKMLKENE-ELYKKQFSRYLKEGLDPEQLPNHFEEVKQKI 190          
The following BLAST results are available for this feature:
BLAST of EY753516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
RL18_METM52.284e-2334.0850S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM73.895e-2332.7650S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM63.895e-2332.7650S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_AERPE5.087e-2333.9150S ribosomal protein L18P OS=Aeropyrum pernix GN=... [more]
RL18_METVS1.133e-2233.1950S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METVA1.133e-2233.1950S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_STAMF1.480e-2234.9350S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_METHJ2.525e-2242.3350S ribosomal protein L18P OS=Methanospirillum hun... [more]
RL18_PYRCJ5.625e-2231.0350S ribosomal protein L18P OS=Pyrobaculum calidifo... [more]
RL18_NANEQ5.625e-2231.3650S ribosomal protein L18P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-G04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753516 ID=EY753516; Name=EY753516; organism=Citrus sinensis; type=EST; length=911bp
GGCCGGNAATAAAGCCTCGACCCACGCGTCCGCTACACTTTGAGCTTCAG
CAATGGCCTTTGCCAACGCTCAAAAGTCAAAAGCTTACTTTAAGCGATAT
CAAGTTAAGTACAAGAGAAGGCGAGAGGGAAAGACTGACTATCGGGCTAG
GATTCGCCTGATCAACCAAGATAAAAACAAGTACAACACGCCAAAGTATC
GGTTTGTTGTGCGATTCACCAACAAAGACATCACTGCACAAATTATATCT
GCCAGCATAGCCGGGGATATAGTCCTTGCATCTGCTTATGCCCATGAGCT
TCCCCGTTATGGTCTTGAGGTGGGCCTCACTAATTATGCAGCAGCTTATT
GCACTGGACTCCTCTTGGCCCGCCGAGTCCTGAAAATGCTTGAGATGGAT
GCTGAGTATGAGGGGAACGTTGAGGCAACAGGAGAGGACTATTCAGTTGA
GCCAACTGAGAACAGGAGGCCTTTCCGTGCCCTGCTCGATGTTGGTCTTG
TGAAAACAACTACTGGTAACCGTGTCTTTGGCGCTCTTAAGGGTTCATTG
GATGGTGGACTTGATATCCCTCACAGNGAGAAGAGATTTGCTGGATTCAG
TAAGGATAGTAAGCAACTTGATGCTGAAGTTCACCGTAAATACATCTATG
GTGGTCATGTTGCTGCCTACATGAGGACTTTGATGGAAGATGAGCCAGAG
AAGTACCAGTCTCACTTTTGTGAATACATCAAGAGAGGTTTTGAGGCTGA
TTACCTTGAAGAGTTGTACAGGAAAGTACATGCTGCCATCCGGGCAGACC
CTTACCGAAANAATTTTGAAAAAAACCTCCACCCGAGCACAAGAGGTCCA
CCCTGAAAAACTTACCTTGAGGAAAGAAAGCCAGGTATTTGAAAGTTGAA
ACACTCATGCC
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