EY753504

Overview
NameEY753504
Unique NameEY753504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:895..1480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753504 vs. ExPASy Swiss-Prot
Match: LEU3_BUCML (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Macrosiphoniella ludovicianae GN=leuB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 39/105 (37.14%), Postives = 61/105 (58.10%), Query Frame = 3
Query:   42 CAGLIGPLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST----TSDFTKAICDHL 341
            CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS   ++R+ + L   A++I  +++S + +G YRT D+   +     T++    I D L
Sbjct:  258 CAIITGSIGMLPSASLNEKNFGLYEPAGGSAPDIAGKNIANPIAQILSLSMLVRYGMNLKKIANKIDQSVISVLKKG-YRTFDISDDNNXFLKTNEMGDVIADAL 361          
BLAST of EY753504 vs. ExPASy Swiss-Prot
Match: LEU3_PSEPF (3-isopropylmalate dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=leuB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 3
Query:   51 LIGPLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 335
            L G +G+ PS ++      + E  HGSAPDIAGK +ANP A +LS   MLR+   LH+ AD I+ A+ S + +   RT D+  +  T   T+ + D
Sbjct:  257 LTGSIGMLPSASLDANNKGMYEPCHGSAPDIAGKGIANPLATILSVSMMLRYSFNLHEAADAIEKAV-SVVLDQGLRTGDIFSTGCTKVGTQEMGD 351          
BLAST of EY753504 vs. ExPASy Swiss-Prot
Match: LEU3_NITEU (3-isopropylmalate dehydrogenase OS=Nitrosomonas europaea GN=leuB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 3
Query:   51 LIGPLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 290
            L G +G+ PS ++ +    L E +HGSAPDIAGK +ANP A +LS+  MLR+       A RI++A+  T+ +  YRT D+
Sbjct:  253 LTGSIGMLPSASLDDRNKGLYEPIHGSAPDIAGKGIANPLATILSAAMMLRYSFNQETAASRIEHAVQKTLQQ-SYRTEDI 332          
BLAST of EY753504 vs. ExPASy Swiss-Prot
Match: LEU3_LEIXX (3-isopropylmalate dehydrogenase OS=Leifsonia xyli subsp. xyli GN=leuB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 3
Query:   27 IIIYLCAGLIGPLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 329
            I+  L A + G +GL  S NI   G   ++ E VHGSAPDIAG+  A+PTA +LS   +LRHL     A+R++ A+ + +A    + A    + TTS    AI
Sbjct:  248 ILTDLAAAISGGIGLAASGNINPVGEFPSMFEPVHGSAPDIAGEQRADPTAAILSVALLLRHLGERPLAERVERAVTTDLAARSGQMATASQTRTTSQIGDAI 350          
BLAST of EY753504 vs. ExPASy Swiss-Prot
Match: LEU3_BUCAI (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=leuB PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 3
Query:   42 CAGLIGPLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 290
            CA + G +G+ PS +  E    L E   GSAPDI GKN+ANP A +LS   ++R+ + L+  AD+I  A+ + + +G YRT+D+
Sbjct:  257 CATITGSIGMLPSASFNEKNFGLYEPAGGSAPDIEGKNIANPIAQILSLSMLVRYGMNLNQIADKIDKAVNNVLKKG-YRTSDI 339          
The following BLAST results are available for this feature:
BLAST of EY753504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
LEU3_BUCML5.962e-1137.143-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_PSEPF7.787e-1139.583-isopropylmalate dehydrogenase OS=Pseudomonas flu... [more]
LEU3_NITEU7.787e-1143.213-isopropylmalate dehydrogenase OS=Nitrosomonas eu... [more]
LEU3_LEIXX7.787e-1139.813-isopropylmalate dehydrogenase OS=Leifsonia xyli ... [more]
LEU3_BUCAI7.787e-1141.673-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-F03-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753504 ID=EY753504; Name=EY753504; organism=Citrus sinensis; type=EST; length=587bp
ATTAACAGCTCGACCCACGCGTCCGCATCATTATTTACCTATGTGCTGGG
TTGATTGGTCCATTGGGCTTAACACCTAGTTGCAATATTGGGGAAGGAGG
AATTGCCCTTGCTGAAGCTGTTCATGGTTCAGCACCTGATATTGCTGGAA
AGAATTTGGCAAATCCAACTGCTTTGCTGTTGAGTTCGGTAACAATGTTG
CGCCATTTGGAGCTCCATGACAAGGCTGATAGGATCCAAAATGCTATCCT
GAGCACAATTGCAGAGGGGAAGTATCGAACTGCAGATCTTGGTGGCTCTT
CAACGACATCAGATTTCACAAAGGCAATCTGCGATCATCTTTAAATATTT
CTTTCTACATAGAATTTGAATTCATGTTCAAGATTTACATTCTACCTTTC
TTTTTTTGAGCAATGTCTCAAATTTGTTTTTTCCCCCCCTTTTTAAAGTG
TTTTTCTTTGAGGGGAATGAGACCCATCACCTTGGTGACTATGTAGAAGT
TTTTTTCTGATGAAACTGTTCAGCCAGAGTGTATATGGCCGTCCTCNGAA
AAAAAAAAANNNTTAAAAAAAAAAAAAAAAAAAANGG
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