EY753503

Overview
NameEY753503
Unique NameEY753503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.974e-12
Identity = 33/97 (34.02%), Postives = 52/97 (53.61%), Query Frame = 1
Query:  103 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDN 393
            +K  T SYLPP+ +  + +++ +++++GW P +E            H  P +    YW MWKLPM G TD   +L E+    +  P   VR+IG+DN
Sbjct:   17 RKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIE------------HTEPDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDN 101          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.303e-11
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 1
Query:  106 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            ++ET SYLPPL+ E +L++I Y++ +GW   LE            H  P      YW MWK+P  G  D   +L E+   ++ YP   VR++G+D     +   F+A  P
Sbjct:   15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP 112          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.303e-11
Identity = 37/106 (34.91%), Postives = 52/106 (49.06%), Query Frame = 1
Query:  106 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFI 423
            K+ET SYLP +  E + ++I YLI  GW P +E            H+ P      YW MWKLPM G      V+ E+    + +P   VR++G+DN    Q   F+
Sbjct:   12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE------------HVEPERASTYYWYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGSAFV 105          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.222e-11
Identity = 39/116 (33.62%), Postives = 56/116 (48.28%), Query Frame = 1
Query:   76 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFI 423
            M V     LKK+ET SYLP ++ E + ++I + I  GW P +E   EKG   +            YW MWKLP+ G      V+ E+    +E+P   VR + +DN    Q   F+
Sbjct:    1 MAVQAYRSLKKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVEH-TEKGTPAK----------ASYWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFV 105          
The following BLAST results are available for this feature:
BLAST of EY753503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS_RHOCA9.974e-1234.02Ribulose bisphosphate carboxylase small chain OS=R... [more]
RBS2_CHRVI1.303e-1133.64Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS1_THIFE1.303e-1134.91Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_NITVU2.222e-1133.62Ribulose bisphosphate carboxylase small chain OS=N... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-F01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753503 ID=EY753503; Name=EY753503; organism=Citrus sinensis; type=EST; length=820bp
AATTCACNGCTCGACCCACGCGTCCGCCAACAANGTAGTACTTCCATTGC
AAGCAACGGCCGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCT
TGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCT
TTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTT
GGAATTCTAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACATGTCAC
CATGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTNT
GGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAA
GGAATACCCACATTCATTCGTCCGAATTATCGGGTTTGACAACATGCGTT
TTGTGCAGTGCTTCATTTTCATTGCTGCCTAGCCTCCAGGCTGTTAGGTT
CCCAATTTAATCTGTGTNCCCCCCCATGTCTTTCTGTTGTTTTTTTTTTG
TGTTACCCCATATTGTTCTTTTTTCCTTGGGGTGTTCGGTTTCGGTTAAT
TTGGCCGCGGGCCGCCGGTGCTCGTGTTCATTCTTTCTCGTGTTCTTTCC
CGGGGCCCCCCCTCTCCCCCCTTTTTTTTTCTTTTTGTGGTTGTGTTATG
GGTCCTGTTAATACTTCAAAGGGGGGGGCTGTTTTTGTGGCTTTCGCTTT
CGCTTCCTCTTTCTTGTTCTCCCNCTGGCCGGTGGTTGACGCGCCCGTTT
GCTGTTTTCCTGGTTGCTTTCTTCCACCATTCTCTTCCGTCTATCCCCCG
GCGCCCCCGTTCGTTATGCG
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