EY753503

Overview
NameEY753503
Unique NameEY753503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.869e-51
Identity = 93/134 (69.40%), Postives = 108/134 (80.60%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            TSIASNG RVQCM+VWPP   KK+ETLSYLP LS E LL E+ YL+++GW+PCLEF  E G+VYRE++ SP YYDGRYWTMWKLPM GCTDATQVL EV E +K YP +++RIIGFDN+R VQC  FIA  P G
Sbjct:   46 TSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.869e-51
Identity = 93/134 (69.40%), Postives = 108/134 (80.60%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            TSIASNG RVQCM+VWPP   KK+ETLSYLP LS E LL E+ YL+++GW+PCLEF  E G+VYRE++ SP YYDGRYWTMWKLPM GCTDATQVL EV E +K YP +++RIIGFDN+R VQC  FIA  P G
Sbjct:   46 TSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.747e-51
Identity = 95/132 (71.97%), Postives = 107/132 (81.06%), Query Frame = 1
Query:   46 IASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            + SNG RVQCMKVWP  G+KKFETLSYLP + DEAL+K+I YL+RS WIPCLEF   KG+V+RE+H SP YYDGRYWTMWKLPM GCTDA QV KEV E +KEYPH+F+RIIGFDN R VQC  FIA  P G
Sbjct:   49 LPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.893e-51
Identity = 90/132 (68.18%), Postives = 108/132 (81.82%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            TS+ASNG RVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEF    G+VYREH  +P YYDGRYWTMWKLPM GCTD +QV+ E+ E +K YP +F+RIIGFDN+R VQC  FIA  P
Sbjct:   47 TSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.391e-51
Identity = 93/133 (69.92%), Postives = 108/133 (81.20%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PP 438
            TSIASNG RV CMKVWPP G KKFETLSYLP L++  L KE++YL+R+ WIPC+EF LE G+VYREH  +P YYDGRYWTMWKLP+ GCTD+ QVLKEV E + EYP++F+RIIGFDN R VQC  FIA  PP
Sbjct:   44 TSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.346e-51
Identity = 93/134 (69.40%), Postives = 106/134 (79.10%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            TSIASNG RVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YL+R GW+PCLEF LE G VYRE+H SP YYDGRYWTMWKLPM GCTDA QVL+E+ E+ K YP  + RIIGFDN+R VQC  F+A  P G
Sbjct:   48 TSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.346e-51
Identity = 91/132 (68.94%), Postives = 107/132 (81.06%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            TSIASNG RVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEF    G+VYREH  +P YYDGRYWTMWKLPM GCTD +QV+ E+ E +K YP +F RIIGFDN+R VQC  FIA  P
Sbjct:   44 TSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.090e-50
Identity = 89/132 (67.42%), Postives = 108/132 (81.82%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            TS+A+NG RVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEF    G+VYREH  +P YYDGRYWTMWKLPM GCTD +QV+ E+ E +K YP +F+RIIGFDN+R VQC  FIA  P
Sbjct:   46 TSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.859e-50
Identity = 86/132 (65.15%), Postives = 111/132 (84.09%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            T++ASN  +VQCMKVWPP GL+KFETLSYLP +S+E L KE +YL+R+GW+PC+EF +  G+VYRE+H SP +YDGRYWTMWKLPM GCTD++QV++E+ E +KEYP +F+R+IGFDN+R VQC  FIA  P
Sbjct:   48 TTLASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.859e-50
Identity = 96/145 (66.21%), Postives = 114/145 (78.62%), Query Frame = 1
Query:   16 PRVRQQXSTSIA--SNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPGC 444
            P  R+  ++S    SNG R++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H SP YYDGRYWTMWKLPM GCTDATQVLKE+ E +K YP +FVRIIGFDN+R VQ   FIA  PPGC
Sbjct:   26 PVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEF-SKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGC 169          
The following BLAST results are available for this feature:
BLAST of EY753503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS_TOBAC2.869e-5169.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_NICSY2.869e-5169.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MUSAC3.747e-5171.97Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_MESCR4.893e-5168.18Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_BRANA6.391e-5169.92Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS_HEVBR8.346e-5169.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_MESCR8.346e-5168.94Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_MESCR1.090e-5067.42Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_CUCSA1.859e-5065.15Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSJ1.859e-5066.21Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-F01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753503 ID=EY753503; Name=EY753503; organism=Citrus sinensis; type=EST; length=820bp
AATTCACNGCTCGACCCACGCGTCCGCCAACAANGTAGTACTTCCATTGC
AAGCAACGGCCGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCT
TGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCT
TTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTT
GGAATTCTAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACATGTCAC
CATGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTNT
GGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAA
GGAATACCCACATTCATTCGTCCGAATTATCGGGTTTGACAACATGCGTT
TTGTGCAGTGCTTCATTTTCATTGCTGCCTAGCCTCCAGGCTGTTAGGTT
CCCAATTTAATCTGTGTNCCCCCCCATGTCTTTCTGTTGTTTTTTTTTTG
TGTTACCCCATATTGTTCTTTTTTCCTTGGGGTGTTCGGTTTCGGTTAAT
TTGGCCGCGGGCCGCCGGTGCTCGTGTTCATTCTTTCTCGTGTTCTTTCC
CGGGGCCCCCCCTCTCCCCCCTTTTTTTTTCTTTTTGTGGTTGTGTTATG
GGTCCTGTTAATACTTCAAAGGGGGGGGCTGTTTTTGTGGCTTTCGCTTT
CGCTTCCTCTTTCTTGTTCTCCCNCTGGCCGGTGGTTGACGCGCCCGTTT
GCTGTTTTCCTGGTTGCTTTCTTCCACCATTCTCTTCCGTCTATCCCCCG
GCGCCCCCGTTCGTTATGCG
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