EY753503

Overview
NameEY753503
Unique NameEY753503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.859e-50
Identity = 96/145 (66.21%), Postives = 114/145 (78.62%), Query Frame = 1
Query:   16 PRVRQQXSTSIA--SNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPGC 444
            P  R+  ++S    SNG R++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H SP YYDGRYWTMWKLPM GCTDATQVLKE+ E +K YP +FVRIIGFDN+R VQ   FIA  PPGC
Sbjct:   26 PVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEF-SKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGC 169          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.859e-50
Identity = 92/133 (69.17%), Postives = 107/133 (80.45%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PP 438
            TSI SNG RV CMKVWPP G KKFETLSYLP L++  L KE++YL+R+ WIPC+EF LE G+VYREH  +P YYDGRYWTMWKLP+ GCTD+ QVLKEV E + EYP++F+RIIGFDN R VQC  FIA  PP
Sbjct:   44 TSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.428e-50
Identity = 92/132 (69.70%), Postives = 105/132 (79.55%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            TSIASNG RV+CM+VWPP  +KK+ETLSYLP LS E LL EI YL+++GW+PCLEF  E G+VYREH  SP YYDGRYWTMWKLPM GCTDATQV  EV E +K YP + +RIIGFDN+R VQC  FIA  P
Sbjct:   46 TSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.428e-50
Identity = 93/132 (70.45%), Postives = 103/132 (78.03%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            TSIASNG RVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EF LE  +VYRE+H SP Y DGRYWTMWKLPM GCTD  QVL EV E +K YP +F+RIIGFDN R VQC  FIA  P
Sbjct:   49 TSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 3.172e-50
Identity = 93/131 (70.99%), Postives = 108/131 (82.44%), Query Frame = 1
Query:   52 SNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPGC 444
            SNG R++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H SP YYDGRYWTMWKLPM GCTDATQVLKE+ E +K YP +FVRIIGFDN+R VQ   FIA  PPGC
Sbjct:   40 SNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEF-SKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGC 169          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.142e-50
Identity = 91/132 (68.94%), Postives = 108/132 (81.82%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            TS+ASNG RVQCM VWPP G+KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEF    G+VYREH  +P YYDGRYWTMWKLPM GCTD +QV+ E+ E +K YP +F+RIIGFDN+R VQC  FIA  P
Sbjct:   47 TSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.066e-50
Identity = 88/134 (65.67%), Postives = 110/134 (82.09%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            +++ SNG RVQCMKVWPP G KK+ETLSYLP L++  L KE++YL+R+ W+PCLEF LE G+VYRE+  SP YYDGRYWTMWKLPM GCTD+ QV+KE+ E +KEYP +++RIIGFDN+R VQC  FIA+ P G
Sbjct:   39 STLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.066e-50
Identity = 88/134 (65.67%), Postives = 111/134 (82.84%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            +++ASNG RVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEF LE G+VYRE+  SP YYDGRYWTMWKLPM GCTD+ QV+KE+ E +KEYP +++RIIGFDN+R VQC  FIA+ P G
Sbjct:   39 STLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.228e-50
Identity = 88/134 (65.67%), Postives = 110/134 (82.09%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            +++ SNG RVQCMKVWPP G KK+ETLSYLP L++  L KE++YL+R+ W+PCLEF LE G+VYRE+  SP YYDGRYWTMWKLPM GCTD+ QV+KE+ E +KEYP +++RIIGFDN+R VQC  FIA+ P G
Sbjct:   44 STLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.228e-50
Identity = 91/134 (67.91%), Postives = 103/134 (76.87%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            +S+ SNG RVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EF LE  +VYRE+H SP Y DGRYWTMWKLPM GCTD  QVL EV E +K YP +F+RIIGFDN R VQC  FIA  P G
Sbjct:   48 SSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181          
The following BLAST results are available for this feature:
BLAST of EY753503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS1_ORYSI1.859e-5066.21Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_BRANA1.859e-5069.17Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_STELP2.428e-5069.70Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_AMAHP2.428e-5070.45Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_ORYSJ3.172e-5070.99Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS5_MESCR4.142e-5068.94Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_FLATR7.066e-5065.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS7_FLAPR7.066e-5065.67Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS4_FLAPR9.228e-5065.67Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_AMAHP9.228e-5067.91Ribulose bisphosphate carboxylase small chain 1, c... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-F01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753503 ID=EY753503; Name=EY753503; organism=Citrus sinensis; type=EST; length=820bp
AATTCACNGCTCGACCCACGCGTCCGCCAACAANGTAGTACTTCCATTGC
AAGCAACGGCCGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCT
TGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCT
TTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTT
GGAATTCTAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACATGTCAC
CATGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTNT
GGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAA
GGAATACCCACATTCATTCGTCCGAATTATCGGGTTTGACAACATGCGTT
TTGTGCAGTGCTTCATTTTCATTGCTGCCTAGCCTCCAGGCTGTTAGGTT
CCCAATTTAATCTGTGTNCCCCCCCATGTCTTTCTGTTGTTTTTTTTTTG
TGTTACCCCATATTGTTCTTTTTTCCTTGGGGTGTTCGGTTTCGGTTAAT
TTGGCCGCGGGCCGCCGGTGCTCGTGTTCATTCTTTCTCGTGTTCTTTCC
CGGGGCCCCCCCTCTCCCCCCTTTTTTTTTCTTTTTGTGGTTGTGTTATG
GGTCCTGTTAATACTTCAAAGGGGGGGGCTGTTTTTGTGGCTTTCGCTTT
CGCTTCCTCTTTCTTGTTCTCCCNCTGGCCGGTGGTTGACGCGCCCGTTT
GCTGTTTTCCTGGTTGCTTTCTTCCACCATTCTCTTCCGTCTATCCCCCG
GCGCCCCCGTTCGTTATGCG
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