EY753503

Overview
NameEY753503
Unique NameEY753503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.205e-49
Identity = 88/134 (65.67%), Postives = 110/134 (82.09%), Query Frame = 1 
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            +++ SNG RVQCMKVWPP G KK+ETLSYLP L++  L KE++YL+R+ W+PCLEF LE G+VYRE+  SP YYDGRYWTMWKLPM GCTD+ QV+KE+ E +KEYP +++RIIGFDN+R VQC  FIA+ P G
Sbjct:   39 STLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172
[Close]
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.574e-49
Identity = 87/134 (64.93%), Postives = 110/134 (82.09%), Query Frame = 1 
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            +++ SNG RVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEF LE G+VYRE+  SP YYDGRYWTMWKLPM GCTD+ QV+KE+ E +KEYP +++RIIGFDN+R VQC  FIA+ P G
Sbjct:   39 STLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172
[Close]
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 2.056e-49
Identity = 90/134 (67.16%), Postives = 109/134 (81.34%), Query Frame = 1 
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            TS+ASNG RVQCM+VWPP G KKFETLSYLP L+   L KE++YL+RS WIPCLEF LE+G+V+R++   P YYDGRYWTMWKLPM GCTD+ QVL+E+   +KEYP++F+RIIGFDN+R VQC  FIA  P G
Sbjct:   48 TSLASNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKPKG 181
[Close]
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.056e-49
Identity = 87/132 (65.91%), Postives = 107/132 (81.06%), Query Frame = 1 
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            +++ SNG +VQCM+VWPP G KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEF    G+VYREH  +P YYDGRYWTMWKLPM GCTD +QV+ E+ E +K YP +F+RIIGFDN+R VQC  FIA  P
Sbjct:   50 STVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181
[Close]
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.056e-49
Identity = 87/134 (64.93%), Postives = 110/134 (82.09%), Query Frame = 1 
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            +++ SNG RVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEF LE G+VYRE+  SP YYDGRYWTMWKLPM GCTD+ QV+KE+ E +KEYP +++RIIGFDN+R VQC  FIA+ P G
Sbjct:   44 STLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177
[Close]
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.056e-49
Identity = 90/133 (67.67%), Postives = 105/133 (78.95%), Query Frame = 1 
Query:   37 STSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            +T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEF L KG+VY EH+ SP YYDGRYWTMWKLPM G TD  QV+KEV EV   YP +FVR+IGF+N+R VQC  FIA  P
Sbjct:    1 NTDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133
[Close]
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.685e-49
Identity = 87/134 (64.93%), Postives = 110/134 (82.09%), Query Frame = 1 
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            +++ SNG RVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEF LE G+VYRE+  SP YYDGRYWTMWKLPM GCTD+ QV+KE+ E +KEYP +++RIIGFDN+R VQC  FIA+ P G
Sbjct:   39 STLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172
[Close]
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.580e-49
Identity = 90/132 (68.18%), Postives = 107/132 (81.06%), Query Frame = 1 
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            +++ SNG RV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  ++G+VYRE+H SP YYDGRYWTMWKLPM GCTDA+QV+ EV E +K YP  FVRIIGFDN R VQC  FIA  P
Sbjct:   46 STLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEF-SKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
[Close]
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.580e-49
Identity = 90/132 (68.18%), Postives = 107/132 (81.06%), Query Frame = 1 
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            +++ SNG RV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  ++G+VYRE+H SP YYDGRYWTMWKLPM GCTDA+QV+ EV E +K YP  FVRIIGFDN R VQC  FIA  P
Sbjct:   46 STLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEF-SKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
[Close]
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.580e-49
Identity = 90/132 (68.18%), Postives = 107/132 (81.06%), Query Frame = 1 
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            +++ SNG RV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  ++G+VYRE+H SP YYDGRYWTMWKLPM GCTDA+QV+ EV E +K YP  FVRIIGFDN R VQC  FIA  P
Sbjct:   46 STLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEF-SKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
The following BLAST results are available for this feature:
BLAST of EY753503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS1_FLAPR1.205e-4965.67Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_FLAPR1.574e-4964.93Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_GOSHI2.056e-4967.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_MESCR2.056e-4965.91Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS2_FLAPR2.056e-4964.93Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_PEA2.056e-4967.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_FLAPR2.685e-4964.93Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS6_LEMGI4.580e-4968.18Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS5_LEMGI4.580e-4968.18Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS4_LEMGI4.580e-4968.18Ribulose bisphosphate carboxylase small chain SSU4... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-F01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753503 ID=EY753503; Name=EY753503; organism=Citrus sinensis; type=EST; length=820bp
AATTCACNGCTCGACCCACGCGTCCGCCAACAANGTAGTACTTCCATTGC
AAGCAACGGCCGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCT
TGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCT
TTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTT
GGAATTCTAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACATGTCAC
CATGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTNT
GGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAA
GGAATACCCACATTCATTCGTCCGAATTATCGGGTTTGACAACATGCGTT
TTGTGCAGTGCTTCATTTTCATTGCTGCCTAGCCTCCAGGCTGTTAGGTT
CCCAATTTAATCTGTGTNCCCCCCCATGTCTTTCTGTTGTTTTTTTTTTG
TGTTACCCCATATTGTTCTTTTTTCCTTGGGGTGTTCGGTTTCGGTTAAT
TTGGCCGCGGGCCGCCGGTGCTCGTGTTCATTCTTTCTCGTGTTCTTTCC
CGGGGCCCCCCCTCTCCCCCCTTTTTTTTTCTTTTTGTGGTTGTGTTATG
GGTCCTGTTAATACTTCAAAGGGGGGGGCTGTTTTTGTGGCTTTCGCTTT
CGCTTCCTCTTTCTTGTTCTCCCNCTGGCCGGTGGTTGACGCGCCCGTTT
GCTGTTTTCCTGGTTGCTTTCTTCCACCATTCTCTTCCGTCTATCCCCCG
GCGCCCCCGTTCGTTATGCG
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