EY753503

Overview
NameEY753503
Unique NameEY753503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.637e-48
Identity = 90/132 (68.18%), Postives = 103/132 (78.03%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            TS+A+NG RV CM+VWPP  LKKFETLSYLP LS+E+LLKEINYL+  GW+PCLEF +    VYRE++ SP YYDGRYWTMWKLPM GCTDA+QV  EV E +  YP + VRIIGFDN R VQC  FIA  P
Sbjct:   45 TSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.128e-47
Identity = 88/132 (66.67%), Postives = 107/132 (81.06%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            +++ S+G RV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  ++G+VYRE++ SP YYDGRYWTMWKLPM GCTDA+QV+ EV E +K YP  FVRIIGFDN R VQC  FIA  P
Sbjct:   42 STLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEF-SKEGFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.312e-47
Identity = 88/139 (63.31%), Postives = 105/139 (75.54%), Query Frame = 1
Query:   25 RQQXSTSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            R   S    SNG R++CM+VWP  G KKFETLSYLPPLS + LLK+++YL+R+GWIPCLEF  + G+VYRE+  SP YYDGRYWTMWKLPM GC DATQV KE+ E  K YP +F R+IGFDN++  QC  FIA  PPG
Sbjct:   31 RSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEF-SKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.755e-43
Identity = 80/128 (62.50%), Postives = 100/128 (78.12%), Query Frame = 1
Query:   52 SNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            SNG RV+CM+VWPP G  KFETLSYLP L++E L+KE+ YL+R+ W+PCLEF LE G + R+++ SP YYDGRYW MWKLPM GCT+A+QV+ EV E  K YP +F+R+IGFDN+R VQC  FI   P
Sbjct:   44 SNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.082e-42
Identity = 84/142 (59.15%), Postives = 106/142 (74.65%), Query Frame = 1
Query:   22 VRQQXSTSIA--SNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            V ++ +TS+A  SNG R++CM+VWP  G KKFETLSYLPPL+ E LLK+++YL+R+ W+PCLEF  ++G+VYRE+  SP YYDGRYWTMWKLPM GCTDA+QV KE+ E    YP     I+GFDN+R  Q   FIA  P G
Sbjct:   27 VARRSTTSLAKVSNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEF-SKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.082e-42
Identity = 79/128 (61.72%), Postives = 97/128 (75.78%), Query Frame = 1
Query:   52 SNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            SNG RV+CM+VWPP   KKFETLSYLP L+ E L+KE+ YL+++ W+PCLEF  E G + R +  SP YYDGRYW MWKLPM GCT+A+QVL EV E  K YP++F+R+IGFDN+R VQC  FI   P
Sbjct:   60 SNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEF-EEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.250e-42
Identity = 78/108 (72.22%), Postives = 92/108 (85.19%), Query Frame = 1
Query:  121 SYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPGC 444
            +YLPPLS EALLK+++YLIRS W+PCLEF  + G+++REH+ SP YYDGRYWTMWKLPM GCTDATQV+ EV EV+KEYP ++VRIIGFDNMR VQC  FIA  PPGC
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEF-SKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPGC 107          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.061e-41
Identity = 81/122 (66.39%), Postives = 93/122 (76.23%), Query Frame = 1
Query:   76 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            M+VWPP GLKKFETLSYLPPL+ E LL E+NYL+  GWIP LEF ++ G+VYREH  SP YYDGRYWTMWKLPM G TD  QV+ EV EV+K  P +FVR IGF++ R VQC  FIA  P G
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.103e-38
Identity = 76/138 (55.07%), Postives = 95/138 (68.84%), Query Frame = 1
Query:   25 RQQXSTSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNMRFVQCFIFIAA*P 435
            + +  T   +NG RV CM+VW P    KFETLSYLPPLS +AL K+I+Y+I+SGW PC+EF ++ G V RE    P YYDGRYWTMWKLPM GCTD+  VL+E+ E +K Y    ++R +GFDN R VQC  FI   P
Sbjct:   42 KSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29
Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = 1
Query:   79 KVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*------LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435
            KVW P   K++ET SYLPPL+++ + ++++Y+I +GW PCLEF       +      R   +S  YYD RYWTMWKLPM GCTD +QVL+EV   Q  +P+ ++R++ FDN++ VQC  F+   P
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154          
The following BLAST results are available for this feature:
BLAST of EY753503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS_SILPR8.637e-4868.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_LEMGI1.128e-4766.67Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_MAIZE7.312e-4763.31Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH3.755e-4362.50Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY7.082e-4259.15Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA7.082e-4261.72Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT9.250e-4272.22Ribulose bisphosphate carboxylase small chain clon... [more]
RBS1_SPIOL2.061e-4166.39Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_MARPA8.103e-3855.07Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CHLMO5.264e-2945.60Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-F01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753503 ID=EY753503; Name=EY753503; organism=Citrus sinensis; type=EST; length=820bp
AATTCACNGCTCGACCCACGCGTCCGCCAACAANGTAGTACTTCCATTGC
AAGCAACGGCCGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCT
TGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCT
TTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTT
GGAATTCTAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACATGTCAC
CATGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTNT
GGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAA
GGAATACCCACATTCATTCGTCCGAATTATCGGGTTTGACAACATGCGTT
TTGTGCAGTGCTTCATTTTCATTGCTGCCTAGCCTCCAGGCTGTTAGGTT
CCCAATTTAATCTGTGTNCCCCCCCATGTCTTTCTGTTGTTTTTTTTTTG
TGTTACCCCATATTGTTCTTTTTTCCTTGGGGTGTTCGGTTTCGGTTAAT
TTGGCCGCGGGCCGCCGGTGCTCGTGTTCATTCTTTCTCGTGTTCTTTCC
CGGGGCCCCCCCTCTCCCCCCTTTTTTTTTCTTTTTGTGGTTGTGTTATG
GGTCCTGTTAATACTTCAAAGGGGGGGGCTGTTTTTGTGGCTTTCGCTTT
CGCTTCCTCTTTCTTGTTCTCCCNCTGGCCGGTGGTTGACGCGCCCGTTT
GCTGTTTTCCTGGTTGCTTTCTTCCACCATTCTCTTCCGTCTATCCCCCG
GCGCCCCCGTTCGTTATGCG
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