EY753503
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 8.637e-48 Identity = 90/132 (68.18%), Postives = 103/132 (78.03%), Query Frame = 1 Query: 40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435 TS+A+NG RV CM+VWPP LKKFETLSYLP LS+E+LLKEINYL+ GW+PCLEF + VYRE++ SP YYDGRYWTMWKLPM GCTDA+QV EV E + YP + VRIIGFDN R VQC FIA P Sbjct: 45 TSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2) HSP 1 Score: 190.274 bits (482), Expect = 1.128e-47 Identity = 88/132 (66.67%), Postives = 107/132 (81.06%), Query Frame = 1 Query: 40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435 +++ S+G RV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF ++G+VYRE++ SP YYDGRYWTMWKLPM GCTDA+QV+ EV E +K YP FVRIIGFDN R VQC FIA P Sbjct: 42 STLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEF-SKEGFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 7.312e-47 Identity = 88/139 (63.31%), Postives = 105/139 (75.54%), Query Frame = 1 Query: 25 RQQXSTSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441 R S SNG R++CM+VWP G KKFETLSYLPPLS + LLK+++YL+R+GWIPCLEF + G+VYRE+ SP YYDGRYWTMWKLPM GC DATQV KE+ E K YP +F R+IGFDN++ QC FIA PPG Sbjct: 31 RSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEF-SKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 3.755e-43 Identity = 80/128 (62.50%), Postives = 100/128 (78.12%), Query Frame = 1 Query: 52 SNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435 SNG RV+CM+VWPP G KFETLSYLP L++E L+KE+ YL+R+ W+PCLEF LE G + R+++ SP YYDGRYW MWKLPM GCT+A+QV+ EV E K YP +F+R+IGFDN+R VQC FI P Sbjct: 44 SNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 7.082e-42 Identity = 84/142 (59.15%), Postives = 106/142 (74.65%), Query Frame = 1 Query: 22 VRQQXSTSIA--SNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441 V ++ +TS+A SNG R++CM+VWP G KKFETLSYLPPL+ E LLK+++YL+R+ W+PCLEF ++G+VYRE+ SP YYDGRYWTMWKLPM GCTDA+QV KE+ E YP I+GFDN+R Q FIA P G Sbjct: 27 VARRSTTSLAKVSNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEF-SKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 7.082e-42 Identity = 79/128 (61.72%), Postives = 97/128 (75.78%), Query Frame = 1 Query: 52 SNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435 SNG RV+CM+VWPP KKFETLSYLP L+ E L+KE+ YL+++ W+PCLEF E G + R + SP YYDGRYW MWKLPM GCT+A+QVL EV E K YP++F+R+IGFDN+R VQC FI P Sbjct: 60 SNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEF-EEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 9.250e-42 Identity = 78/108 (72.22%), Postives = 92/108 (85.19%), Query Frame = 1 Query: 121 SYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPGC 444 +YLPPLS EALLK+++YLIRS W+PCLEF + G+++REH+ SP YYDGRYWTMWKLPM GCTDATQV+ EV EV+KEYP ++VRIIGFDNMR VQC FIA PPGC Sbjct: 1 AYLPPLSTEALLKQVDYLIRSKWVPCLEF-SKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPGC 107
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 2.061e-41 Identity = 81/122 (66.39%), Postives = 93/122 (76.23%), Query Frame = 1 Query: 76 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441 M+VWPP GLKKFETLSYLPPL+ E LL E+NYL+ GWIP LEF ++ G+VYREH SP YYDGRYWTMWKLPM G TD QV+ EV EV+K P +FVR IGF++ R VQC FIA P G Sbjct: 1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 8.103e-38 Identity = 76/138 (55.07%), Postives = 95/138 (68.84%), Query Frame = 1 Query: 25 RQQXSTSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNMRFVQCFIFIAA*P 435 + + T +NG RV CM+VW P KFETLSYLPPLS +AL K+I+Y+I+SGW PC+EF ++ G V RE P YYDGRYWTMWKLPM GCTD+ VL+E+ E +K Y ++R +GFDN R VQC FI P Sbjct: 42 KSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29 Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = 1 Query: 79 KVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*------LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*P 435 KVW P K++ET SYLPPL+++ + ++++Y+I +GW PCLEF + R +S YYD RYWTMWKLPM GCTD +QVL+EV Q +P+ ++R++ FDN++ VQC F+ P Sbjct: 30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154 The following BLAST results are available for this feature:
BLAST of EY753503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >EY753503 ID=EY753503; Name=EY753503; organism=Citrus sinensis; type=EST; length=820bpback to top |