EY753476

Overview
NameEY753476
Unique NameEY753476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.991e-16
Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 3
Query:  282 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA--GELEFFPDPT------TLFIVEKIFIGWAEGKR 584
            WFPG   P  LDGS PGDFGFDPLGL + PE      +SEI HCRWAML   G+ +PE L     +    W     G+  +  +P       T+  +E + I +AE +R
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR 156          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.022e-15
Identity = 43/109 (39.45%), Postives = 56/109 (51.38%), Query Frame = 3
Query:  282 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSW--YTAGELEFFPDPT------TLFIVEKIFIGWAEGKR 584
            W PG   P +LDGS PGDFGFD LGLG  P  L    +SE++HCRWAML   GI +PE L     +    W     G+  +   P       T+  +E + I + E +R
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.072e-15
Identity = 56/168 (33.33%), Postives = 83/168 (49.40%), Query Frame = 3
Query:  225 AGTRSVSVSAAAAD---PNTPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPT--------TLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGV 662
            A T+ ++ SA+ +    P+  L+   F G  PP +L G  PGD+G+D  GL +DPE    N + E++HCRWAMLGA G   PELL + G+      W+ AG        L++  +P+         ++  + I +G  EG R  +   P    TDPI P       G+
Sbjct:   44 ATTKKLTASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR--IAGGPLGEVTDPIYPGGSFDPLGL 208          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.072e-15
Identity = 48/145 (33.10%), Postives = 70/145 (48.28%), Query Frame = 3
Query:  300 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPT--------TLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGVGVPRGCFG 686
            PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L++  +P+         ++  + + +G  EG R  +   P     DP+ P       G+      FG
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--IAGGPLGEVVDPLYPGGSFDPLGLADDPEAFG 207          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.072e-15
Identity = 52/162 (32.10%), Postives = 75/162 (46.30%), Query Frame = 3
Query:  228 GTRSVSVSAAAADPNTPLWFPGSTP----------PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPT--------TLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILP 635
            G   VS+        T +W+    P          P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L++  +P          ++  + + +G+ EG R  V   P     DPI P
Sbjct:   31 GGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR--VGGGPLGEGLDPIYP 190          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 3
Query:  300 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPT--------TLFIVEKIFIGWAEGKRWA 590
            PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L++  +P+         ++  + + +G  EG R A
Sbjct:   66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIA 178          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 3
Query:  300 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPT--------TLFIVEKIFIGWAEGKRWA 590
            PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L++  +P+         ++  + I +G  EG R A
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA 177          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.476e-14
Identity = 48/137 (35.04%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  300 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPT--------TLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGV 662
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L++  +P+         ++  + I +G  EG R  +   P    TDPI P       G+
Sbjct:   63 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYR--IAGGPLGEVTDPIYPGGSFDPLGL 197          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.927e-14
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  303 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPT--------TLFIVEKIFIGWAEGKR 584
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L++  +P          ++  + + +G+ EG R
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR 175          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.927e-14
Identity = 52/142 (36.62%), Postives = 70/142 (49.30%), Query Frame = 3
Query:  285 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPT--------TLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGV 662
            F GS PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG        L++  +P+         ++  + I +G  EG R  V   P     DPI P       G+
Sbjct:   61 FSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR--VAGGPLGEVEDPIYPGGSFDPLGL 199          
The following BLAST results are available for this feature:
BLAST of EY753476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB121_HORVU5.991e-1641.28Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.022e-1539.45Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB2B_PINSY5.072e-1533.33Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_MAIZE5.072e-1533.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI5.072e-1532.10Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_WHEAT6.624e-1537.17Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL6.624e-1538.05Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_SOYBN1.476e-1435.04Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB26_PETSP1.927e-1436.36Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_POLMU1.927e-1436.62Chlorophyll a-b binding protein type 1 member F3, ... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-C04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753476 ID=EY753476; Name=EY753476; organism=Citrus sinensis; type=EST; length=909bp
ATTCAGNGCTCGACCCACGCGTCCGNACTTTACTTCACACAAACGCCAGT
CATAATTTCCCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTG
TGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTA
GATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTG
AAATTGAGAAAAAGCGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAG
TGCGGCTGCAGCTGATCCTAACACGCCTCTCTGGTTCCCAGGCAGCACTC
CTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCT
CTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGA
AATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTC
CGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACA
GCTGGGGAGCTAGAGTTCTTTCCAGACCCCACCACCCTGTTCATTGTTGA
GAAGATATTCATAGGCTGGGCAGAGGGCAAACGGTGGGCCGTCATTATAA
AGCCAGGCTGTGTGAACACTGACCCGATCCTTCCCAACAACAAGCTTACC
GGGCCCGGTGTTGGGGTACCCAGGGGGTGCTTTGGTGTTGCCCCCCTTNG
CTTGGGGATCCGGGTCCGCCCTGAGAAGTAAAGGACCTGAGGACCAAGGG
GCATCAGAAGGGGAAATGGGCTATNTTGGCCTGGGTGGGTGCTTGGTTCC
CTCCCTTTTCTCCTGCCCGTGCCCTTTGTCCTTTTTCTGGGTACCCTGGT
GGTTTTGGGNTGGCTCCGCTTGTGGCTGCTGTGCCTCCCGGGGGGTGTAT
ACCAAAAAA
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