EY753476

Overview
NameEY753476
Unique NameEY753476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.294e-14
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 3
Query:  300 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPT--------TLFIVEKIFIGWAEGKRWA 590
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L++  +P+         ++ V+ + +G  EG R A
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA 177          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.608e-14
Identity = 45/130 (34.62%), Postives = 63/130 (48.46%), Query Frame = 3
Query:  234 RSVSVSAAAADPNTPLWFP---------GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPTTLFIVEKIFIGWA 572
            R  +  A  A   +P + P             P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L++  +P +L   + I   WA
Sbjct:   36 RKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP-SLVHAQSILAIWA 164          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.608e-14
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 3
Query:  303 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPT--------TLFIVEKIFIGWAEGKRWA 590
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L++  +P+         ++  + I +G  EG R A
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA 179          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.608e-14
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 3
Query:  303 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPT--------TLFIVEKIFIGWAEGKRWA 590
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L++  +P+         ++  + I +G  EG R A
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA 177          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.324e-14
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  303 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPTTLFIVEKIFIGWA 572
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L++  +P +L   + I   WA
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP-SLVHAQSILAIWA 162          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.324e-14
Identity = 49/137 (35.77%), Postives = 66/137 (48.18%), Query Frame = 3
Query:  300 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDP--------TTLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGV 662
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L++   P          ++  + I +G  EG R  V   P    TDPI P       G+
Sbjct:   78 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYR--VAGGPLGEVTDPIYPGGNFDPLGL 212          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.324e-14
Identity = 49/137 (35.77%), Postives = 66/137 (48.18%), Query Frame = 3
Query:  300 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDP--------TTLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGV 662
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L++   P          ++  + I +G  EG R  V   P    TDPI P       G+
Sbjct:   78 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYR--VAGGPLGEVTDPIYPGGNFDPLGL 212          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.324e-14
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  303 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPTTLFIVEKIFIGWA 572
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L++  +P +L   + I   WA
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP-SLVHAQSILAIWA 164          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.324e-14
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  303 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPTTLFIVEKIFIGWA 572
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L++  +P +L   + I   WA
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP-SLVHAQSILAIWA 164          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.324e-14
Identity = 52/162 (32.10%), Postives = 78/162 (48.15%), Query Frame = 3
Query:  234 RSVSVSAAAADPNTPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEFFPDPT--------TLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGV 662
            + VS S+    PN   +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+  G        L++  +P+         ++  + + +G  EG R  V  +P     DP+ P       G+
Sbjct:   43 KPVSSSSPWYGPNRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR--VAGEPLGEVVDPLYPGGSFDPLGL 201          
The following BLAST results are available for this feature:
BLAST of EY753476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB21_ORYSJ4.294e-1437.17Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC5.608e-1434.62Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2A_SPIOL5.608e-1437.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_TOBAC5.608e-1437.50Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC7.324e-1440.82Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_PYRPY7.324e-1435.77Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY7.324e-1435.77Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB25_TOBAC7.324e-1440.82Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB24_TOBAC7.324e-1440.82Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL7.324e-1432.10Chlorophyll a-b binding protein C, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-C04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753476 ID=EY753476; Name=EY753476; organism=Citrus sinensis; type=EST; length=909bp
ATTCAGNGCTCGACCCACGCGTCCGNACTTTACTTCACACAAACGCCAGT
CATAATTTCCCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTG
TGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTA
GATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTG
AAATTGAGAAAAAGCGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAG
TGCGGCTGCAGCTGATCCTAACACGCCTCTCTGGTTCCCAGGCAGCACTC
CTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCT
CTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGA
AATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTC
CGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACA
GCTGGGGAGCTAGAGTTCTTTCCAGACCCCACCACCCTGTTCATTGTTGA
GAAGATATTCATAGGCTGGGCAGAGGGCAAACGGTGGGCCGTCATTATAA
AGCCAGGCTGTGTGAACACTGACCCGATCCTTCCCAACAACAAGCTTACC
GGGCCCGGTGTTGGGGTACCCAGGGGGTGCTTTGGTGTTGCCCCCCTTNG
CTTGGGGATCCGGGTCCGCCCTGAGAAGTAAAGGACCTGAGGACCAAGGG
GCATCAGAAGGGGAAATGGGCTATNTTGGCCTGGGTGGGTGCTTGGTTCC
CTCCCTTTTCTCCTGCCCGTGCCCTTTGTCCTTTTTCTGGGTACCCTGGT
GGTTTTGGGNTGGCTCCGCTTGTGGCTGCTGTGCCTCCCGGGGGGTGTAT
ACCAAAAAA
back to top