EY753463

Overview
NameEY753463
Unique NameEY753463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_DELAS (50S ribosomal protein L28 OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.885e-12
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  TGKK    N VS +N+KT +R   NLQY++ W E+  R+V+LR+S+ AL+ I+KNG+D+V    R
Sbjct:    3 RVCEVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRVSSAALRLIDKNGIDSVLADLR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_ACISJ (50S ribosomal protein L28 OS=Acidovorax sp. (strain JS42) GN=rpmB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.885e-12
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  TGKK    N VS +N+KT +R   NLQY++ W E+  R+V+LR+S+ AL+ I+KNG+D+V    R
Sbjct:    3 RVCEVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRVSSAALRLIDKNGIDSVLADMR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_ACIAC (50S ribosomal protein L28 OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.885e-12
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  TGKK    N VS +N+KT +R   NLQY++ W E+  R+V+LR+S+ AL+ I+KNG+D+V    R
Sbjct:    3 RVCDVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRVSSAALRLIDKNGIDSVLADLR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RK28_GALSU (50S ribosomal protein L28, chloroplastic OS=Galdieria sulphuraria GN=rpl28 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.885e-12
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLD 472
            R C    K SN ANKVS SNHK+ + QFVNLQ KKVW    K+++KLR+STK +K + K  +D
Sbjct:    3 RKCQLLFKTSNTANKVSHSNHKSKRLQFVNLQKKKVWSSLKKKWIKLRISTKMIKILNKKNID 65          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_METFK (50S ribosomal protein L28 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpmB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.004e-11
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  TGKK    N VS +N+KT +R   NLQ +K W E+  R+V LR++  AL+TI+KNG+DAV    R
Sbjct:    3 RVCQVTGKKPMVGNNVSHANNKTKRRFLPNLQNRKFWVESENRWVSLRITNAALRTIDKNGIDAVLADLR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_CHRVO (50S ribosomal protein L28 OS=Chromobacterium violaceum GN=rpmB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.712e-11
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  TGK+    N VS +N+KT +R   NLQY+K W E+  R+V+LR+S  AL+TI+K G+D V    R
Sbjct:    3 RVCKVTGKRPMTGNNVSHANNKTKRRFLPNLQYRKFWVESENRWVRLRVSNAALRTIDKVGIDVVLADLR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_VARPS (50S ribosomal protein L28 OS=Variovorax paradoxus (strain S110) GN=rpmB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  TGK     N VS +N+KT +R   NLQY++ W E   R+V+LR+S+ AL+ I+KNG+DAV    R
Sbjct:    3 RVCDVTGKGPMVGNNVSHANNKTKRRFLPNLQYRRFWVETENRWVRLRVSSAALRLIDKNGIDAVLADLR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_POLNA (50S ribosomal protein L28 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rpmB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLR 505
            RVC  TGK     N VS +N+KT +R   NLQY+++W E+  R+V+LR++   L+ I+KNG+DAV     +DLR
Sbjct:    3 RVCQVTGKGPMVGNNVSHANNKTKRRFMPNLQYRRIWVESENRWVRLRITAAGLRLIDKNGIDAVL----VDLR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_LARHH (50S ribosomal protein L28 OS=Laribacter hongkongensis (strain HLHK9) GN=rpmB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  TGK+    N VS +N+KT +R   NLQY++ W E+  R+V++R+S  AL+TI+K G+DAV    R
Sbjct:    3 RVCKVTGKRPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRMRVSNAALRTIDKVGIDAVLADLR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_ACIF5 (50S ribosomal protein L28 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rpmB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  TGKK    N VS +++KT +R   NLQY + W E+  R+V++R+STK ++TI+K G+D V    R
Sbjct:    3 RVCKVTGKKPMAGNNVSHAHNKTRRRFLPNLQYHRFWVESENRWVRMRVSTKGIRTIDKKGIDVVLADLR 72          
The following BLAST results are available for this feature:
BLAST of EY753463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RL28_DELAS5.885e-1248.5750S ribosomal protein L28 OS=Delftia acidovorans (... [more]
RL28_ACISJ5.885e-1248.5750S ribosomal protein L28 OS=Acidovorax sp. (strai... [more]
RL28_ACIAC5.885e-1248.5750S ribosomal protein L28 OS=Acidovorax avenae sub... [more]
RK28_GALSU5.885e-1253.9750S ribosomal protein L28, chloroplastic OS=Galdie... [more]
RL28_METFK1.004e-1150.0050S ribosomal protein L28 OS=Methylobacillus flage... [more]
RL28_CHRVO1.712e-1148.5750S ribosomal protein L28 OS=Chromobacterium viola... [more]
RL28_VARPS2.236e-1148.5750S ribosomal protein L28 OS=Variovorax paradoxus ... [more]
RL28_POLNA2.920e-1145.9550S ribosomal protein L28 OS=Polaromonas naphthale... [more]
RL28_LARHH2.920e-1147.1450S ribosomal protein L28 OS=Laribacter hongkongen... [more]
RL28_ACIF52.920e-1145.7150S ribosomal protein L28 OS=Acidithiobacillus fer... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-A12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753463 ID=EY753463; Name=EY753463; organism=Citrus sinensis; type=EST; length=823bp
ATTCCAAAACTGACCCACGCGTCCGCAAATACACTTGGAATCGAAAAGAT
GGCAACAATGCCCGACACCGGGAGGAGTTTTATTGGGAAACACTTCCAAT
CTACCCTGTCGCCGCCCACGTCTGTCTCCGAAGTCCATGGTTAAGGTAGT
CTCCTCCTCGGAAGAACTGGGTTTCGTTACTTCACAACTCAGTGGCATCA
AAATTTCGTACCGCCTACCTGACGTGGCCACACCCATTTCCTCTCGTCCT
TTCGCCCCGGGTCTTCAACCTATTGTTGCGCGTAGAGTGTGCCCCTTCAC
TGGAAAGAAATCAAACAAGGCAAACAAAGTTTCCTTCTCTAACCACAAGA
CAACTAAGCGGCAGTTTGTTAACCTACAGTATAAGAAGGTTTGGTGGGAG
GCCGGCAAGCGTTATGTGAAGCTGCGTTTGTCAACAAAGGCATTAAAGAC
GATAGAGAAAAATGGATTGGATGCTGTTGCTAAGAAGGCTAGAATAGATC
TTCGCAAGGAATGATATAGATGGTCTAACTATTTTTACCTATAGCTGTTG
GTAAAGCTTGTATGCTCACTGTTTCTCTCGAAATTTAATTTCATGTTGCA
CTGTATCTTCTTTTTGCTTGTTCTGTTGAATTCTTCCCAATTAAATGAGA
ATACTGATCATTAAAGCCTCAAGGTTTTTGTTAGTTCATTTTCGCATGTC
GTCATGAGGCTTTGCGTCGATGGCTCTATGAGCATTCAGCGCGTNGTGTA
TGATCTTCTATCAGAAGAAAGAGAATTGTAAAACACAGAACAGCATTTTT
GCTGAAAAAAAAAAAAAAAAAAA
back to top