EY753420

Overview
NameEY753420
Unique NameEY753420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 6.843e-21
Identity = 55/155 (35.48%), Postives = 74/155 (47.74%), Query Frame = 2
Query:  272 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 706
            S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                   + LG   DP YPGG
Sbjct:   64 SGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----------------EPLGEVVDPLYPGG 194          

HSP 2 Score: 58.9214 bits (141), Expect = 6.843e-21
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            S  PLGL +D ++  + K+KE+KNGR  M ++ G+FVQ +VT  G L+NL DH
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 247          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 6.845e-21
Identity = 57/166 (34.34%), Postives = 78/166 (46.99%), Query Frame = 2
Query:  245 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 706
            G DR  +    S ++ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P         +++  ++ LMG  E  R                     LG   DP YPGG
Sbjct:   50 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGP----------------LGEIVDPLYPGG 191          

HSP 2 Score: 58.151 bits (139), Expect = 6.845e-21
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            S  PLGL +D +   + K+KE+KNGR  M ++ G+FVQ +VT  G L+NL DH
Sbjct:  192 SFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 244          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.871e-21
Identity = 58/148 (39.19%), Postives = 78/148 (52.70%), Query Frame = 2
Query:  263 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 703
            W    QS +YLDGSL GD GFDPL L+ DPE      + +W    +V+NGR+AMLG  G + PE+L KAGL+    A  W +       G   Y+A   T   + M+   + E RR+QD  NPGS+ +     F+ Y     +  YPG
Sbjct:   36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPE------DLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLM---NAPEWLRL-----PGKETYFASSSTALRVHMS-STYVEIRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPG 166          

HSP 2 Score: 33.4982 bits (75), Expect = 6.871e-21
Identity = 17/36 (47.22%), Postives = 20/36 (55.56%), Query Frame = 1
Query:  760 KLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            K KE+ NGR  M A LG+ VQ  V   G  +NL  H
Sbjct:  180 KEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQH 215          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.158e-20
Identity = 59/178 (33.15%), Postives = 80/178 (44.94%), Query Frame = 2
Query:  209 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 706
            V +  S+     G DR  +    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG
Sbjct:   37 VTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVTDPIYPGG 190          

HSP 2 Score: 57.3806 bits (137), Expect = 1.158e-20
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            S  PLGL  D ++  + K+KE+KNGR  M ++ G+FVQ +VT  G L+NL DH
Sbjct:  191 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 243          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.506e-20
Identity = 58/166 (34.94%), Postives = 77/166 (46.39%), Query Frame = 2
Query:  245 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 706
            G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG
Sbjct:   53 GPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVVDPLYPGG 194          

HSP 2 Score: 56.9954 bits (136), Expect = 1.506e-20
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            S  PLGL +D ++  + K+K +KNGR  M ++ G+FVQ +VT  G L+NL DH
Sbjct:  195 SFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 247          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.507e-20
Identity = 57/166 (34.34%), Postives = 76/166 (45.78%), Query Frame = 2
Query:  245 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 706
            G DR  +    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG
Sbjct:   48 GPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVVDPLYPGG 189          

HSP 2 Score: 57.3806 bits (137), Expect = 1.507e-20
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            S  PLGL  D ++  + K+KE+KNGR  M ++ G+FVQ +VT  G L+NL DH
Sbjct:  190 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 242          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 2.549e-20
Identity = 61/183 (33.33%), Postives = 84/183 (45.90%), Query Frame = 2
Query:  194 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 706
            RK +   +  S+     G+DR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG
Sbjct:   35 RKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--GWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGP----------------LGEIVDPLYPGG 193          

HSP 2 Score: 53.9138 bits (128), Expect = 2.549e-20
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            S  PLGL +  ++  + K+KE+KNGR  M ++ G+FVQ +VT  G L++L DH
Sbjct:  194 SFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADH 246          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.549e-20
Identity = 57/166 (34.34%), Postives = 77/166 (46.39%), Query Frame = 2
Query:  245 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 706
            G DR  +    S ++ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG
Sbjct:   53 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGP----------------LGEVTDPLYPGG 194          

HSP 2 Score: 57.3806 bits (137), Expect = 2.549e-20
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            S  PLGL  D ++  + K+KE+KNGR  M ++ G+FVQ +VT  G L NL DH
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDH 247          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.549e-20
Identity = 59/183 (32.24%), Postives = 81/183 (44.26%), Query Frame = 2
Query:  194 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 706
            RK     + AS+     G DR  +    S ++ SYL G  P DYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+  + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG
Sbjct:   36 RKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELFARNGIKFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVIDPLYPGG 194          

HSP 2 Score: 58.9214 bits (141), Expect = 2.549e-20
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            S  PLGL +D ++  + K+KE+KNGR  M ++ G+FVQ +VT  G L+NL DH
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 247          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.311e-20
Identity = 52/127 (40.94%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  290 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTL---FVLEMALMGFAEHRR------FQDWANPG 631
            YL+G + GDYG+DP GL   PE        K+ A+ E+I+ R+AMLGA G I PE L K G      A+ WF+TG +   G T NY+    P  L    V E+ L+G AE+ R      F+D  +PG
Sbjct:   84 YLNGEVAGDYGYDPFGLGKKPENFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPG 203          

HSP 2 Score: 53.9138 bits (128), Expect = 3.311e-20
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:  718 PLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            PLGL KD +     K+KE+KNGR  M A+LG+F+Q  VT  G ++NL  H
Sbjct:  208 PLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKH 257          
The following BLAST results are available for this feature:
BLAST of EY753420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB23_NICPL6.843e-2135.48Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB23_APIGR6.845e-2134.34Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB120_HORVU6.871e-2139.19Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB23_SOYBN1.158e-2033.15Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB25_TOBAC1.506e-2034.94Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB21_MAIZE1.507e-2034.34Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_WHEAT2.549e-2033.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC2.549e-2034.34Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_PETSP2.549e-2032.24Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB26_ARATH3.311e-2040.94Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-002-E12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753420 ID=EY753420; Name=EY753420; organism=Citrus sinensis; type=EST; length=896bp
CTTATTCTTCAAAANCAGAAGCAGAAAGCCGAAGCACTTTTAATTTATCG
TATTGAAGTAGAGAAACAAGAGGAAAAAAGAAAATTAAAAAATGGCAACC
CAAGCTTTGGTTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGACA
AATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGGGTCATCAAGAAAAG
GTTCCTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAGCA
GACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGG
CAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTG
AAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTC
ATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGA
GATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGT
TCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGAC
CCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCA
CCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACT
TCCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGATCCGGCTTACCCT
GGAGGACCTCTATTCAACCTCTGGGTCTGGGGAAAGATGAGAAGTCAAGG
AAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATNGNNCATGNTNGC
AATCTTGGGGTACTTTGTTCAAGGTCTTGTTACAAGGAGTGGGGCCTTAC
AGAACCTATGGGATCACTGGCTGATCCTGTAACAACATGTTTTGAC
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