EY753420

Overview
NameEY753420
Unique NameEY753420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 4.599e-19
Identity = 54/166 (32.53%), Postives = 74/166 (44.58%), Query Frame = 2
Query:  245 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLF--------VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 703
            G +R  W   ++   + +YL G  PGDYG+D  GLS DPE    + E       E+I+ R+AMLGA+G   PE+L K+G    E    WF+ G  I   G  +Y  +P  +          +++ LMG  E  R     N G  G               DP YPG
Sbjct:   38 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCQTPELLAKSGTKFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGPAGEGL------------DPLYPG 179          

HSP 2 Score: 54.6842 bits (130), Expect = 4.599e-19
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            S  PLGL  D  +  + K+KE+KNGR    ++ G+FVQ +VT  G +QNL DH
Sbjct:  181 SFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDH 233          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.707e-18
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            +  PLGL  D  +  + K+KE+KNGR  M A LG+FVQ +VT  G ++NL DH
Sbjct:  202 AFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDH 254          

HSP 2 Score: 56.225 bits (134), Expect = 1.707e-18
Identity = 56/184 (30.43%), Postives = 77/184 (41.85%), Query Frame = 2
Query:  188 SSRKGSFVV-RAASTPPVKQGADRPL-WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 703
            S++KG+  V +++S+     G D    W    Q      G  PGDYG+D  GLS DPE    + E       E+I+ R  +LGA+G + PE+L     I    A  WF+ G  I   G  NY  +P  +          +++ LMG  E  R     N G  G               DP YPG
Sbjct:   39 STKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGGPAGEGL------------DPLYPG 200          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.396e-17
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            S  PLGLG D +   + K+KE+KNGR  M ++ G+FVQ +VT  G ++NL DH
Sbjct:  192 SFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADH 244          

HSP 2 Score: 51.9878 bits (123), Expect = 1.396e-17
Identity = 54/161 (33.54%), Postives = 76/161 (47.20%), Query Frame = 2
Query:  245 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 691
            GADR L+    S    SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+A+   +G + PE+L + G+   E    WF+ G  I   G  ++  +P          ++  ++ LMG  E           + GR   +    YLGGS DP
Sbjct:   50 GADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPE---TFAKNREL---EVIHCRWAIAVGLGCVFPELLARNGVKFGEG--VWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHV-------AGGRLGEVVDPLYLGGSFDP 195          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.075e-17
Identity = 55/182 (30.22%), Postives = 82/182 (45.05%), Query Frame = 2
Query:  155 LGARSAQSPTGSSRKGS--FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 691
            +G  S  +P+  S +    F   A ++  V   A+   WF  +   ++LDGS PGD+GFDPLGL+  PE    F E       E+ + R+AML   G + PE LG    +  +   A    G     G    W +  T+  +E   + FAE +R  +  +P           +KY GG+ DP
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAE---WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKE------SEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA-LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEK---------KKYPGGAFDP 174          

HSP 2 Score: 44.2838 bits (103), Expect = 3.075e-17
Identity = 23/54 (42.59%), Postives = 31/54 (57.41%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFV-QGLVTRSGALQNLWDH 867
            +  PLG  KD    ++ KLKE+KNGR  M A +G+ V Q     +G L+NL  H
Sbjct:  171 AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATH 224          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.037e-15
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            S   LGL +D ++  + K+KE+KNGR  M ++ G+FVQ +V+R   L+NL DH
Sbjct:  196 SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADH 248          

HSP 2 Score: 50.0618 bits (118), Expect = 2.037e-15
Identity = 49/148 (33.11%), Postives = 62/148 (41.89%), Query Frame = 2
Query:  287 SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 703
            SYL G  PGDYG+D  GLS    T  F + + L   EVI+ R AM  A+G I PE+L   G    E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG
Sbjct:   71 SYLTGEFPGDYGWDTAGLSAYPET--FAKNREL---EVIHSRCAMSAALGCIFPELLSVMGQGFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIA----------------RGPLGEVTDPLYPG 195          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.482e-15
Identity = 62/200 (31.00%), Postives = 98/200 (49.00%), Query Frame = 2
Query:  137 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF----EKYLGGSGDPAYPGGPLFN 718
            ++++ +L   S      S+     VV AA+  P K          +     +LDGSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AML  +G      +G+A      T + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D+ +P S   ++   +    E +   +G+  YPGG  F+
Sbjct:   24 KSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMLAVLGI----FVGQAW-----TGIPWFEAGADPGAVAPFSFG----TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFD 204          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.156e-14
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867
            S  PLGL  D ++  + K+KE+KNGR  M ++ G+FVQ +VT  G L+NL DH
Sbjct:  184 SFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 236          

HSP 2 Score: 42.3578 bits (98), Expect = 2.156e-14
Identity = 35/113 (30.97%), Postives = 49/113 (43.36%), Query Frame = 2
Query:  395 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 706
            EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG
Sbjct:   89 EVIHSRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVTDPIYPGG 183          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.166e-14
Identity = 65/205 (31.71%), Postives = 100/205 (48.78%), Query Frame = 2
Query:  143 ARQILGARSAQSPTGSSRKGSFVVRAAST-----PPVKQGADR--PLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF----EKYLGGSGDPAYPGGPLFN 718
            ++ +L A  A    G++    F V AA+      P V+ G +   P W         LDGSLPGDYGFDPLGL  DP     F+  KW    E+I+GR+AM   +G      +G+A      + + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D+ +P S   ++   +    E +   +G+  YPGG  F+
Sbjct:   23 SQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEW---------LDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----TLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFD 199          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.222e-13
Identity = 65/201 (32.34%), Postives = 93/201 (46.27%), Query Frame = 2
Query:  152 ILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQ----------DWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN 718
            +LGA      T   R   FVV AA+  P K          +     +LDGSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AM   +G      +G+A      + + WF+ G  P A   +++     +L   ++ LMG+ E +R+           DWA P S   + F  F      +G+  YPGG  F+
Sbjct:   27 LLGAHVTARVTTPKR---FVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANF------TGEQGYPGGKFFD 199          
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 60/162 (37.04%), Postives = 83/162 (51.23%), Query Frame = 2
Query:  245 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDP 691
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G     G ++ Y GG+ DP
Sbjct:   50 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLAKNGVKFGEA--VWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYR----VGGGPLGE----GLDQLYPGGAFDP 195          
The following BLAST results are available for this feature:
BLAST of EY753420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB2_CHLRE4.599e-1932.53Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA1.707e-1849.06Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB48_MAIZE1.396e-1749.06Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB121_HORVU3.075e-1730.22Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2_MALDO2.037e-1545.28Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB4_SPIOL6.482e-1531.00Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB22_SOYBN2.156e-1449.06Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB4A_SOLLC7.166e-1431.71Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC1.222e-1332.34Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB21_SILPR5.678e-1137.04Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-002-E12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753420 ID=EY753420; Name=EY753420; organism=Citrus sinensis; type=EST; length=896bp
CTTATTCTTCAAAANCAGAAGCAGAAAGCCGAAGCACTTTTAATTTATCG
TATTGAAGTAGAGAAACAAGAGGAAAAAAGAAAATTAAAAAATGGCAACC
CAAGCTTTGGTTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGACA
AATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGGGTCATCAAGAAAAG
GTTCCTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAGCA
GACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGG
CAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTG
AAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTC
ATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGA
GATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGT
TCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGAC
CCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCA
CCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACT
TCCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGATCCGGCTTACCCT
GGAGGACCTCTATTCAACCTCTGGGTCTGGGGAAAGATGAGAAGTCAAGG
AAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATNGNNCATGNTNGC
AATCTTGGGGTACTTTGTTCAAGGTCTTGTTACAAGGAGTGGGGCCTTAC
AGAACCTATGGGATCACTGGCTGATCCTGTAACAACATGTTTTGAC
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