EY753420
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 4.599e-19 Identity = 54/166 (32.53%), Postives = 74/166 (44.58%), Query Frame = 2 Query: 245 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLF--------VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 703 G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R+AMLGA+G PE+L K+G E WF+ G I G +Y +P + +++ LMG E R N G G DP YPG Sbjct: 38 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCQTPELLAKSGTKFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGPAGEGL------------DPLYPG 179 HSP 2 Score: 54.6842 bits (130), Expect = 4.599e-19 Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1 Query: 709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867 S PLGL D + + K+KE+KNGR ++ G+FVQ +VT G +QNL DH Sbjct: 181 SFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDH 233
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 1.707e-18 Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1 Query: 709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867 + PLGL D + + K+KE+KNGR M A LG+FVQ +VT G ++NL DH Sbjct: 202 AFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDH 254 HSP 2 Score: 56.225 bits (134), Expect = 1.707e-18 Identity = 56/184 (30.43%), Postives = 77/184 (41.85%), Query Frame = 2 Query: 188 SSRKGSFVV-RAASTPPVKQGADRPL-WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 703 S++KG+ V +++S+ G D W Q G PGDYG+D GLS DPE + E E+I+ R +LGA+G + PE+L I A WF+ G I G NY +P + +++ LMG E R N G G DP YPG Sbjct: 39 STKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGGPAGEGL------------DPLYPG 200
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 1.396e-17 Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 Query: 709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867 S PLGLG D + + K+KE+KNGR M ++ G+FVQ +VT G ++NL DH Sbjct: 192 SFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADH 244 HSP 2 Score: 51.9878 bits (123), Expect = 1.396e-17 Identity = 54/161 (33.54%), Postives = 76/161 (47.20%), Query Frame = 2 Query: 245 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 691 GADR L+ S SYL G PGDYG+D GLS DPE F + + L EVI+ R+A+ +G + PE+L + G+ E WF+ G I G ++ +P ++ ++ LMG E + GR + YLGGS DP Sbjct: 50 GADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPE---TFAKNREL---EVIHCRWAIAVGLGCVFPELLARNGVKFGEG--VWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHV-------AGGRLGEVVDPLYLGGSFDP 195
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 3.075e-17 Identity = 55/182 (30.22%), Postives = 82/182 (45.05%), Query Frame = 2 Query: 155 LGARSAQSPTGSSRKGS--FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 691 +G S +P+ S + F A ++ V A+ WF + ++LDGS PGD+GFDPLGL+ PE F E E+ + R+AML G + PE LG + + A G G W + T+ +E + FAE +R + +P +KY GG+ DP Sbjct: 13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAE---WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKE------SEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA-LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEK---------KKYPGGAFDP 174 HSP 2 Score: 44.2838 bits (103), Expect = 3.075e-17 Identity = 23/54 (42.59%), Postives = 31/54 (57.41%), Query Frame = 1 Query: 709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFV-QGLVTRSGALQNLWDH 867 + PLG KD ++ KLKE+KNGR M A +G+ V Q +G L+NL H Sbjct: 171 AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATH 224
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 2.037e-15 Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 1 Query: 709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867 S LGL +D ++ + K+KE+KNGR M ++ G+FVQ +V+R L+NL DH Sbjct: 196 SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADH 248 HSP 2 Score: 50.0618 bits (118), Expect = 2.037e-15 Identity = 49/148 (33.11%), Postives = 62/148 (41.89%), Query Frame = 2 Query: 287 SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 703 SYL G PGDYG+D GLS T F + + L EVI+ R AM A+G I PE+L G E WF+ G I G +Y +P ++ ++ LMG E R LG DP YPG Sbjct: 71 SYLTGEFPGDYGWDTAGLSAYPET--FAKNREL---EVIHSRCAMSAALGCIFPELLSVMGQGFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIA----------------RGPLGEVTDPLYPG 195
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.482e-15 Identity = 62/200 (31.00%), Postives = 98/200 (49.00%), Query Frame = 2 Query: 137 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF----EKYLGGSGDPAYPGGPLFN 718 ++++ +L S S+ VV AA+ P K + +LDGSLPGD+GFDPLGL DP F+ KW E+I+GR+AML +G +G+A T + WF+ G P A +++ TL ++ LMG+ E +R+ D+ +P S ++ + E + +G+ YPGG F+ Sbjct: 24 KSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMLAVLGI----FVGQAW-----TGIPWFEAGADPGAVAPFSFG----TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFD 204
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 2.156e-14 Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 Query: 709 SIQPLGLGKDEKSRKDFKLKEVKNGRXXMXAILGYFVQGLVTRSGALQNLWDH 867 S PLGL D ++ + K+KE+KNGR M ++ G+FVQ +VT G L+NL DH Sbjct: 184 SFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 236 HSP 2 Score: 42.3578 bits (98), Expect = 2.156e-14 Identity = 35/113 (30.97%), Postives = 49/113 (43.36%), Query Frame = 2 Query: 395 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 706 EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E R LG DP YPGG Sbjct: 89 EVIHSRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVTDPIYPGG 183
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 7.166e-14 Identity = 65/205 (31.71%), Postives = 100/205 (48.78%), Query Frame = 2 Query: 143 ARQILGARSAQSPTGSSRKGSFVVRAAST-----PPVKQGADR--PLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF----EKYLGGSGDPAYPGGPLFN 718 ++ +L A A G++ F V AA+ P V+ G + P W LDGSLPGDYGFDPLGL DP F+ KW E+I+GR+AM +G +G+A + + WF+ G P A +++ TL ++ LMG+ E +R+ D+ +P S ++ + E + +G+ YPGG F+ Sbjct: 23 SQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEW---------LDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----TLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFD 199
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.222e-13 Identity = 65/201 (32.34%), Postives = 93/201 (46.27%), Query Frame = 2 Query: 152 ILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQ----------DWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN 718 +LGA T R FVV AA+ P K + +LDGSLPGD+GFDPLGL DP F+ KW E+I+GR+AM +G +G+A + + WF+ G P A +++ +L ++ LMG+ E +R+ DWA P S + F F +G+ YPGG F+ Sbjct: 27 LLGAHVTARVTTPKR---FVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANF------TGEQGYPGGKFFD 199
BLAST of EY753420 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11 Identity = 60/162 (37.04%), Postives = 83/162 (51.23%), Query Frame = 2 Query: 245 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDP 691 G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L K G+ E WF+ G I G +Y +P ++ ++ LMG E R G +G G ++ Y GG+ DP Sbjct: 50 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLAKNGVKFGEA--VWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYR----VGGGPLGE----GLDQLYPGGAFDP 195 The following BLAST results are available for this feature:
BLAST of EY753420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >EY753420 ID=EY753420; Name=EY753420; organism=Citrus sinensis; type=EST; length=896bpback to top |