EY753407

Overview
NameEY753407
Unique NameEY753407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753407 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.002e-32
Identity = 59/125 (47.20%), Postives = 85/125 (68.00%), Query Frame = 2
Query:   53 KVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFE------LEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 409
            KVW P   K++ET SYLPPL+++ + ++++Y+I +GW PCLEF       +      R    S GYYD RYWTMWKLPM+GCTD +QVL+EV   Q  +P+ ++R++ FDN +QVQC+ F+  +P
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154          
BLAST of EY753407 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.308e-32
Identity = 63/126 (50.00%), Postives = 85/126 (67.46%), Query Frame = 2
Query:   50 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 409
            M VW P   K FET SYLPPLSDE +  +++Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of EY753407 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.231e-32
Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 2
Query:  182 ELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 412
            ELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of EY753407 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.231e-32
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = 2
Query:   50 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 409
            M VW P   K FET SYLPPL+DE +  +++Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of EY753407 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.935e-30
Identity = 62/138 (44.93%), Postives = 86/138 (62.32%), Query Frame = 2
Query:   23 ASNGGRVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 412
            ASN    +C  M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   33 ASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of EY753407 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.015e-29
Identity = 58/127 (45.67%), Postives = 82/127 (64.57%), Query Frame = 2
Query:   50 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 412
            M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY753407 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.938e-29
Identity = 58/127 (45.67%), Postives = 81/127 (63.78%), Query Frame = 2
Query:   50 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 412
            M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   45 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 171          
BLAST of EY753407 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.938e-29
Identity = 58/127 (45.67%), Postives = 81/127 (63.78%), Query Frame = 2
Query:   50 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 412
            M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY753407 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.718e-29
Identity = 58/127 (45.67%), Postives = 82/127 (64.57%), Query Frame = 2
Query:   50 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 412
            M VW P   K FET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTDA+QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY753407 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 59/136 (43.38%), Postives = 86/136 (63.24%), Query Frame = 2
Query:   26 SNG--GRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFE-LEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 409
            SNG   + + M VW P   K FET SYLPPL+D+ + K+++Y++R+ W PCLEF   ++ +V  ++    G     Y D RYWTMWKLPM+GC D +QVL E+    K +P +++R++ FD  RQVQ   F+  +P
Sbjct:   26 SNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 161          
The following BLAST results are available for this feature:
BLAST of EY753407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS_CHLMO1.002e-3247.20Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_CHLRE1.308e-3250.00Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_SINAL2.231e-3277.92Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS1_CHLRE2.231e-3249.21Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_ACECL7.935e-3044.93Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS6_ACECL3.015e-2945.67Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_ACECL3.938e-2945.67Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACECL3.938e-2945.67Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_ACEAT6.718e-2945.67Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_BATOE8.774e-2943.38Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-002-D09-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753407 ID=EY753407; Name=EY753407; organism=Citrus sinensis; type=EST; length=603bp
CCACAATGATTTTACTTCCATTGCAAGCAACGGCGGCAGAGTCCAATGCA
TGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATAC
CTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAATTACCTTAT
CCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGG
TGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCTACTGG
ACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTT
GAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAA
TTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCATTGCT
GCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCA
TGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGA
TCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTG
CTGCTCAAACTTTTTTGGTTTTCTCCCCGAAAAAAAAAAAAANAAAAAAA
NAA
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