EY753379

Overview
NameEY753379
Unique NameEY753379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753379 vs. ExPASy Swiss-Prot
Match: ARP42_SCHPO (SWI/SNF and RSC complexes subunit arp42 OS=Schizosaccharomyces pombe GN=arp42 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.740e-20
Identity = 56/202 (27.72%), Postives = 102/202 (50.50%), Query Frame = 3
Query:  153 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILCLDLAGRDLTDALMKILTERGSLLPP 752
            E+I  LV D G+   + G+AG+++P  + PS      + GV   +  ++ YV DE Q    I  + +K    +GI+ +W+     W      +L+V P E+ +++TE   NP++ R+++ +  FE  +VPA Y+  QAV   +A+ ++T +++D G   +   P+ +G  +   I    LAG  L   + ++        PP
Sbjct:    8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEFPP 203          
BLAST of EY753379 vs. ExPASy Swiss-Prot
Match: ARP6_ARATH (Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.947e-19
Identity = 59/199 (29.65%), Postives = 102/199 (51.26%), Query Frame = 3
Query:  168 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR---------TTGIVLDSGDGVSHTVPIYEGYALPHAILCLDLAGRDLTDALMKILTER 734
            +V DNG G++KAG  G+  P  V P+ + +P  +   +        + DE         ++ PI+ G + N D   +IW H F + L +AP    +LLTEAPL+  + +    +++FE F   ++Y+A  Q+++ LY + R            +V+D G   +H VP+   + L HAI  +DL G+  T+ L ++++ R
Sbjct:    5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKPLSSKKFIHPSPLTT-LSDEIDLTSA--AVRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFEDFGFSSLYIAHPQSLVHLYEASRQPDSILSKTQCSLVVDCGFSFTHAVPVLHNFTLNHAIKRIDLGGKAFTNYLKELVSYR 200          
BLAST of EY753379 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSJ (Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.665e-19
Identity = 59/200 (29.50%), Postives = 102/200 (51.00%), Query Frame = 3
Query:  168 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI---LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIYEGYALPHAILCLDLAGRDLTDALMKILTER 734
            +V DNG G++KAGF GD  P AV P+ + +P         G K   V D+ Q++      +TL+ PI+ G + N +   ++W     N L+V P    +LL E   NP A +    +++FE     ++ VA   +++ LY + R          +V+D G   +H  P+ + + L +A+  +DL G+ LT+ L ++++ R
Sbjct:    8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKPP--------GSKKWLVADQLQAQDVDVTGMTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVFEELGFKSLCVADAPSLVHLYEASRQPSLFRAQCSLVVDCGFSFTHASPVLQNFTLNYAVRRMDLGGKALTNYLKELISYR 199          
BLAST of EY753379 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSI (Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.665e-19
Identity = 59/200 (29.50%), Postives = 102/200 (51.00%), Query Frame = 3
Query:  168 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI---LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIYEGYALPHAILCLDLAGRDLTDALMKILTER 734
            +V DNG G++KAGF GD  P AV P+ + +P         G K   V D+ Q++      +TL+ PI+ G + N +   ++W     N L+V P    +LL E   NP A +    +++FE     ++ VA   +++ LY + R          +V+D G   +H  P+ + + L +A+  +DL G+ LT+ L ++++ R
Sbjct:    8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKPP--------GSKKWLVADQLQAQDVDVTGMTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVFEELGFKSLCVADAPSLVHLYEASRQPSLFRAQCSLVVDCGFSFTHASPVLQNFTLNYAVRRMDLGGKALTNYLKELISYR 199          
BLAST of EY753379 vs. ExPASy Swiss-Prot
Match: ARP4A_ARATH (Actin-related protein 4A OS=Arabidopsis thaliana GN=ARP4A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.262e-18
Identity = 49/136 (36.03%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  141 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------------MGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 500
            M   +++  +V D G+   KAG+AG+DAP+AVFPS+VG     G+ +                 G++  Y G +A + +R  + +  P + GIV++WD ++ +W H F N L + P EHP+LL E PLN +  REK
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEKGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136          
BLAST of EY753379 vs. ExPASy Swiss-Prot
Match: ARP4_ASPFU (Actin-related protein 4 OS=Aspergillus fumigatus GN=arp4 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.925e-17
Identity = 63/232 (27.16%), Postives = 105/232 (45.26%), Query Frame = 3
Query:  153 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA-QSKRGILTLKYPI-EHGIVSNWDDMEKIWHHTFYNELR--------------------------VAPEE-----HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILCLDLAGRDLTDALMKILTERGSLLP 749
            ++I  +V D G    +AGFAG+D P++V P+  G+  +        Q+    GD+   + R  L++  P+   G+V +WD  EK+W ++F + L                           V  EE      P+L+TE   NP   REK  +I  E +  PA Y+A   VL+ +A+G+ + +V+D G       P+++G  L   +    L G D   + ++ L +  S  P
Sbjct:    9 DEISAIVLDPGFSTTRAGFAGEDTPKSVIPTYYGKYTYE------AQEKLIFGDDIFVTPRPGLSIHNPMGRDGVVEDWDMAEKVWEYSFTSRLTGPKAGNPFQNGLNDVANGELPSEMEGVETEEKPLADSPLLMTECGWNPTKAREKTVEIAMEKWGTPAFYLARNGVLAAFAAGKASALVVDVGASNISVTPVHDGMILKRGVQHSPLGG-DYISSQLRALFKTNSPQP 233          
BLAST of EY753379 vs. ExPASy Swiss-Prot
Match: ARP4_EMENI (Actin-related protein 4 OS=Emericella nidulans GN=arp4 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.489e-16
Identity = 60/236 (25.42%), Postives = 105/236 (44.49%), Query Frame = 3
Query:  153 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA-QSKRGILTLKYPI-EHGIVSNWDDMEKIWHHTFYNELRVAP-------------------------------EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILCLDLAGRDLTD---ALMKILTERGSLLPP 752
            +++  +V D G    +AGFAG+D P+++ P+  G+          GQ+    GD+   + R  L++  P+   G+V +WD  EK+W ++F + L  A                                 + P+L++E   NP   REK  +I  E +  PA Y+A   VL+ +A+G+ + +V+D G       P+++G  L   +    L G  ++    AL K  T +   + P
Sbjct:   15 DEVSAIVLDPGFSTTRAGFAGEDTPKSLVPTYYGKYSFE------GQEKLIFGDDVFVTPRPSLSVGNPMGRDGVVEDWDMAEKLWEYSFTSRLTGAKPSNPLHNGLNDLVEGELPTEMEGVETNEKPLADSPLLMSECSWNPTKAREKTIEIAMEKWGTPAFYLARNGVLASFAAGKASALVVDIGASNISVTPVHDGMVLKRGVQHSPLGGDYISSQIRALFKTNTPQPITITP 244          
BLAST of EY753379 vs. ExPASy Swiss-Prot
Match: ARP11_HUMAN (Actin-related protein 11 OS=Homo sapiens GN=ARP11 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.000e-15
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  513 MFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILCLDLAGRDLTDALMKILTERGSLLPP 752
            MFE+FNVP +Y+A+QAVL+L AS  +        TGIV+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L ER   +PP
Sbjct:    1 MFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPP 88          
BLAST of EY753379 vs. ExPASy Swiss-Prot
Match: ARP6_NEUCR (Actin-like protein arp-6 OS=Neurospora crassa GN=arp-6 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.228e-15
Identity = 63/212 (29.72%), Postives = 101/212 (47.64%), Query Frame = 3
Query:  168 LVCDNGTGMVKAGFAGDDA----PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNE---LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY----ASGRTTGIVLDS--------GDGVSHT--VPIYEGYALPHAILCLDLAGRDLTDALMKILTER 734
            LV DNG   +KAGF  DD     PR + P+ + R RH  +         YVG E +  +    L  + P+E G + NW+  ++IW   F+++    +  P +  ++LTE P +  + +    QI+FE +   + Y  +  V + Y    +  RT    +DS          G SHT   PI +G  L  AI  LD+ G+ +T+ L ++L+ R
Sbjct:   22 LVLDNGADTIKAGFVSDDKSDGKPR-IIPNCLARDRHRKI---------YVGSELEKCKDFSELAFRRPVEKGFIVNWEAQKEIWDREFFDDKAAQKCDPSDTRLILTEQPNSLPSLQTHCDQIVFEEYGFASYYRGLGPVFNAYRDIQSIFRTPQSTIDSPAQVILLIDSGYSHTTVTPILQGRPLHPAIRRLDVGGKLMTNYLTRLLSVR 223          
BLAST of EY753379 vs. ExPASy Swiss-Prot
Match: ARP4_GIBZE (Actin-related protein 4 OS=Gibberella zeae GN=ARP4 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.909e-15
Identity = 57/212 (26.89%), Postives = 95/212 (44.81%), Query Frame = 3
Query:  153 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK-YPIEHGIVSNWDDMEKIWHHTFYNELRVA---------------PE-----------------------EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 671
            +++  LV D G    +AGFAG+D P+++ PS  G       + G   +D + GDE    R    ++ Y  +  +V +WD   +IW +   N L+                 PE                       E+P+L+TEAP N    REK  +I+ E +  PA +++   VL+ +A+G+ T +V+D G   +    I++G  L  +I
Sbjct:   19 DEVSALVLDPGYCSTRAGFAGEDVPKSILPSFYGH------VTGDNSRDLF-GDECLIPRENYEVRNYMNKDSVVEDWDVAARIWENMLVNRLQPERQTPPSKNGLNDDPRPEGQDGEGDVAMDDAEAESMEKPLGENPLLVTEAPWNTPKAREKAIEIIMENWGCPAFWMSRTPVLAAFAAGKATSLVIDVGGANTSVTAIHDGMVLKRSI 223          
The following BLAST results are available for this feature:
BLAST of EY753379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 470
Match NameE-valueIdentityDescription
ARP42_SCHPO8.740e-2027.72SWI/SNF and RSC complexes subunit arp42 OS=Schizos... [more]
ARP6_ARATH1.947e-1929.65Actin-related protein 6 OS=Arabidopsis thaliana GN... [more]
ARP6_ORYSJ5.665e-1929.50Actin-related protein 6 OS=Oryza sativa subsp. jap... [more]
ARP6_ORYSI5.665e-1929.50Actin-related protein 6 OS=Oryza sativa subsp. ind... [more]
ARP4A_ARATH1.262e-1836.03Actin-related protein 4A OS=Arabidopsis thaliana G... [more]
ARP4_ASPFU6.925e-1727.16Actin-related protein 4 OS=Aspergillus fumigatus G... [more]
ARP4_EMENI4.489e-1625.42Actin-related protein 4 OS=Emericella nidulans GN=... [more]
ARP11_HUMAN1.000e-1547.73Actin-related protein 11 OS=Homo sapiens GN=ARP11 ... [more]
ARP6_NEUCR2.228e-1529.72Actin-like protein arp-6 OS=Neurospora crassa GN=a... [more]
ARP4_GIBZE2.909e-1526.89Actin-related protein 4 OS=Gibberella zeae GN=ARP4... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-002-B02-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753379 ID=EY753379; Name=EY753379; organism=Citrus sinensis; type=EST; length=898bp
GGTTTTTGGTCCGNATTCCCAGGCCGACCCACGCGTCCGGCAGTACCAAT
TTCAGAGCGATAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCGAA
TTTTTCTCTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATG
CTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAG
GCTGGATTTGCTGGAGATGATGCTCCGAGGGCAGTATTCCCTAGTATTGT
TGGTAGGCCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATG
CCTATGTTGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAA
TACCCAATTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGAT
CTGGCATCATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACC
CAGTGCTTCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAG
ATGACCCAAATTATGTTTGAAACCTTCAATGTGCCAGCCATGTACGTTGC
CATCCAGGCCGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTG
TGCTGGATTCTGGTGATGGTGTGTCTCATACTGTACCAATCTATGAGGGA
TATGCCCTTCCTCATGCCATTCTTTGTTTGGACTTGGCTGGTCGTGATCT
CACTGATGCATTGATGAAGATTCTTACTGAAAGAGGTTCATTGTTACCCC
CCAGCCCGAACGGAAATTGCCGTGACATGAAGAAAACCTTGCTATGGTGC
CCTAGACTTGAGCAAAACTTGGACTGCCAACACACCTTTTGTGTTAAAAA
ACTATGACCTGCCTGGGGCCAACCACCCCTTGGACTGAAAATATCCTT
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