EY753317

Overview
NameEY753317
Unique NameEY753317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.934e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  123 KMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQV 326
            + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  + +
Sbjct:   31 RFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDL 98
[Close]
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.934e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  123 KMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQV 326
            + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  + +
Sbjct:   31 RFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDL 98
[Close]
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.934e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  123 KMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQV 326
            + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  + +
Sbjct:   31 RFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDL 98
[Close]
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.934e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  123 KMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQV 326
            + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  + +
Sbjct:   31 RFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDL 98
[Close]
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.934e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  123 KMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQV 326
            + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  + +
Sbjct:   31 RFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDL 98
The following BLAST results are available for this feature:
BLAST of EY753317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
DCEB_ECO573.934e-1145.59Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL3.934e-1145.59Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI3.934e-1145.59Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL63.934e-1145.59Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECO573.934e-1145.59Glutamate decarboxylase alpha OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-D06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753317 ID=EY753317; Name=EY753317; organism=Citrus sinensis; type=EST; length=839bp
CCACGCGTCCGAAAGTTGCAAACCAAAACTGAAACTTGAAAGTTATGAGA
AAAGTGAAAATTAAAAAGGACTTATTTTATTTTCAATTAGATCTTATGGG
GTGTGAATGTTGATGTAGATTCAAGATGCCAGATAATTCAATGCCAAAGG
AGGCAGCCTATCAGGTAATAAATGATGAGCTGATGTTAGATGGAAATCCA
AGGCTGAACTTGGCATCTTTTGTGACCACTTGGATGGAGCCCGAGTGTGA
TAAGCTTGTCATGGCTTCGATTAATAAAAACTATGTTGACATGGATGAAT
ACCCTGTAACCACAGAGCTCCAGGTATCTCTGAGTCAATGGCCCTTTGTG
TAAAGATATTGCAGCTGAATCATTTCTTGGTTTTTTTATTAAGCATTGTC
AAATAATTGGACAATGTATTATACTGATCGAACAGCATCGATTTATATCC
TGAGTATTTGGGGACGTATTCCTTTTTCTTTTTTTTTAACCATAAAGTAA
TTGTTTTAACTGATTCTGCAGAATCGGTGTGTGAATATGNATGCCCACCT
ATTTAATACTCCAGTTGCGGATGACAAGACTGCAGTGGGCGTGGGGACTG
TAGGTTCATCANAAGGCATAATGCTTGCTGGCTTGGCTTTTAAAAAGAAG
GGCAGCAAAAGAAGAAAGAGCAAGGCAACCCTATGATAACCCCAATATAT
CACTGAACCTAATGTGCAGTATGCTGGGAAAAAATTGCGAGGTACTTTGA
GGTTAACTGAAAGAGGTGAACCTGGACAAGGTTTTTTGGGATGAATCCTG
GAAAGCTGGTGATTTGGAAATAAAACACCATTGGTGTGC
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