EY753310

Overview
NameEY753310
Unique NameEY753310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13087 contig Csv1_Contig13087:1..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY753310 vs. ExPASy Swiss-Prot
Match: PHB_CHICK (Prohibitin OS=Gallus gallus GN=PHB PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.598e-35
Identity = 62/115 (53.91%), Postives = 88/115 (76.52%), Query Frame = 2 
Query:  305 VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIXKILTERAANFTL 649
            V  EGTH ++PW ++P+I+D R+RP  +   +GS+DLQ V I LR+L RPV  +LP ++ ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE VSR++ + LTERAA F L
Sbjct:   49 VVGEGTHFLIPWVQKPIIFDCRSRPRNIPVITGSKDLQNVNITLRILFRPVTAQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSEDLTERAATFGL 163

HSP 2 Score: 37.7354 bits (86), Expect = 5.598e-35
Identity = 14/26 (53.85%), Postives = 22/26 (84.62%), Query Frame = 3 
Query:  150 NSLYNVEGGHRAIMFNRITGVKDKVI 227
            ++LYNV+ GHRA++F+R  GV+D V+
Sbjct:   25 SALYNVDAGHRAVIFDRFRGVQDTVV 50

HSP 3 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:  613 EDSDGEGSQFHIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVKKAEQER--GVLSSEPRESHSAXLLGKPL 840
            ED     + F + LDDVS+T LTFGKEFT A+E KQVA QEAERA++IV+KAEQ++   V+S+E  +S +A L+   L
Sbjct:  152 EDLTERAATFGLILDDVSLTHLTFGKEFTEAVEMKQVAQQEAERARFIVEKAEQQKKAAVISAE-GDSKAAELIANSL 228
The following BLAST results are available for this feature:
BLAST of EY753310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHB_CHICK5.598e-3553.91Prohibitin OS=Gallus gallus GN=PHB PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-C11-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753310 ID=EY753310; Name=EY753310; organism=Citrus sinensis; type=EST; length=884bp
CCACGCGTCCGATAAACCCTAAAACTAAACCCCCTTCTCAGGACATGAAC
TTCAACAATGTCAAAGTTCCCAAGGTGCCTGGTGGTGGTGCAGCTTCTGC
CTTAATTAAGGTAGGAATTATTGGTGGGATTGGTTTGTATGCTGCTGCTA
ACAGTCTCTACAATGTTGAGGGAGGGCATCGAGCCATTATGTTCAACCGT
ATAACTGGTGTGAAGGACAAGGTTATTACTTCACCTGAAATTCCTGGTGT
TTGTGGCTGACTTGGATTTTCACTATTATGAAGAATTTGGATTTATTTGC
CTGTGTTTATCCTGAGGGGACTCATCTAATGGTTCCATGGTTTGAGAGAC
CTGTCATCTATGATGTTCGCGCAAGACCCCACTTAGTGGAGAGTACTTCT
GGTAGCCGTGATCTTCAGATGGTTAAGATTGGGCTTCGGGTCCTCACTCG
TCCTGTAGCAGACAAGTTGCCAACAGTTTATCGAGCCCTTGGTGAGAATT
ATAATGAAAGGGTTCTACCTTCCATCATTCATGAAACTCTCAAGGCTGTG
GTTGCACAGTACAATGCCAGCCAGCTCATTACTCAGCGTGAGACTGTTAG
TAGGGAAATCCNGAAGATTCTGACGGAGAGGGCAGCCAATTTCACATTGC
CCTAGATGATGTCTCTATAACAAGCCTCACTTTTGGGAAAGAATTTACAT
CCGCCATTGAAGCTAAACAGGTAGCTGCGCAAGAAGCAGAGAGGGCTAAA
TATATTGTGAAAAAAGCTGAACAGGAAAGAGGAGTGCTATCATCCGAGCC
CAGGGAGAGCCACAGTGCTCNACTATTGGGCAAGCCATTGCCACAATCCA
GCTTTATCAACTGAGGAAAATGAACCTGCAGAAA
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