GE213160

Overview
NameGE213160
Unique NameGE213160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3500 contig Csv1_Contig3500:315..570. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_MOUSE (40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.170e-25
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++YHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   87 DLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_HUMAN (40S ribosomal protein S13 OS=Homo sapiens GN=RPS13 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.170e-25
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++YHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   87 DLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_CRIGR (40S ribosomal protein S13 OS=Cricetulus griseus GN=RPS13 PE=3 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 4.170e-25
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++YHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   87 DLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_CHICK (40S ribosomal protein S13 OS=Gallus gallus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 4.170e-25
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++YHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   87 DLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_BOVIN (40S ribosomal protein S13 OS=Bos taurus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 4.170e-25
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++YHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   87 DLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_MUSDO (40S ribosomal protein S13 (Fragment) OS=Musca domestica GN=RpS13 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.113e-25
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++YH+IKKAVAIRKHLERNRKDKD KFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:   47 IPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 114          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_DROME (40S ribosomal protein S13 OS=Drosophila melanogaster GN=RpS13 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 7.113e-25
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++YH+IKKAVAIRKHLERNRKDKD KFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:   84 IPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_SPOFR (40S ribosomal protein S13 OS=Spodoptera frugiperda GN=RpS13 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 2.070e-24
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++Y+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:   87 DLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_CHOPR (40S ribosomal protein S13 OS=Choristoneura parallela GN=RpS13 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 2.070e-24
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++Y+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:   87 DLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_ICTPU (40S ribosomal protein S13 OS=Ictalurus punctatus GN=rps13 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 2.703e-24
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++YHLIKKAVA+RKHLERNRKDKD+KFRLILVESRIHRLARYYK  + L P WKYES+TAS LVA
Sbjct:   87 DLYHLIKKAVAVRKHLERNRKDKDAKFRLILVESRIHRLARYYKTKRVLAPNWKYESSTASALVA 151          
The following BLAST results are available for this feature:
BLAST of GE213160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS13_MOUSE4.170e-2581.5440S ribosomal protein S13 OS=Mus musculus GN=Rps13... [more]
RS13_HUMAN4.170e-2581.5440S ribosomal protein S13 OS=Homo sapiens GN=RPS13... [more]
RS13_CRIGR4.170e-2581.5440S ribosomal protein S13 OS=Cricetulus griseus GN... [more]
RS13_CHICK4.170e-2581.5440S ribosomal protein S13 OS=Gallus gallus GN=RPS1... [more]
RS13_BOVIN4.170e-2581.5440S ribosomal protein S13 OS=Bos taurus GN=RPS13 P... [more]
RS13_MUSDO7.113e-2579.4140S ribosomal protein S13 (Fragment) OS=Musca dome... [more]
RS13_DROME7.113e-2579.4140S ribosomal protein S13 OS=Drosophila melanogast... [more]
RS13_SPOFR2.070e-2483.0840S ribosomal protein S13 OS=Spodoptera frugiperda... [more]
RS13_CHOPR2.070e-2483.0840S ribosomal protein S13 OS=Choristoneura paralle... [more]
RS13_ICTPU2.703e-2481.5440S ribosomal protein S13 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionC23 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213160 ID=GE213160; Name=GE213160; organism=Citrus sinensis; type=EST; length=256bp
ATTAGCGTGGTCGCGGCCGAGGTGTACCACCTCATCAAGAAAGCAGTCGC
TATTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTA
GGTTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAG
GAGACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAG
CACTCTCGTGGCATAGGTGAGATATATTTGGTACCTGCCCGGGCGGCCGC
TCGAAA
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