GE213160

Overview
NameGE213160
Unique NameGE213160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3500 contig Csv1_Contig3500:315..570. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_WUCBA (40S ribosomal protein S13 OS=Wuchereria bancrofti GN=RPS13 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.530e-24
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++YHLIKKAV IRKHLERNRKDKDSK+RLILVESRIHRLARYYK  ++LP  WKYES+TAS LV+
Sbjct:   84 IPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATWKYESSTASALVS 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_SCHPO (40S ribosomal protein S13 OS=Schizosaccharomyces pombe GN=rps13 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.530e-24
Identity = 51/65 (78.46%), Postives = 59/65 (90.77%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++Y+LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARYY++   LPP WKYES TAS LVA
Sbjct:   87 DLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVGALPPTWKYESATASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_BRUPA (40S ribosomal protein S13 OS=Brugia pahangi GN=RPS13 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.530e-24
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++YHLIKKAV IRKHLERNRKDKDSK+RLILVESRIHRLARYYK  ++LP  WKYES+TAS LV+
Sbjct:   84 IPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATWKYESSTASALVS 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_CIOIN (40S ribosomal protein S13 OS=Ciona intestinalis GN=RPS13 PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.865e-24
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++YHLIKKAVA+RKHLERNRKD DSKFRLILVESRIHRL RYYK    LPP WKYES TAS LVA
Sbjct:   87 DIYHLIKKAVAMRKHLERNRKDTDSKFRLILVESRIHRLGRYYKTKGVLPPNWKYESATASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_CANMA (40S ribosomal protein S13 OS=Candida maltosa GN=RPS13 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.865e-24
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++Y LIKKAVA+RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+    LPP WKYES TAS LVA
Sbjct:   87 DLYFLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTVSVLPPNWKYESATASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_PLUXY (40S ribosomal protein S13 OS=Plutella xylostella GN=RpS13 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.342e-23
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++Y+LIKKAVA+ KHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:   87 DLYYLIKKAVAMGKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_GILMI (40S ribosomal protein S13 OS=Gillichthys mirabilis GN=rps13 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 1.752e-23
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++YHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + L P WKY S+TAS LVA
Sbjct:   87 DLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLAPNWKYXSSTASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_CAEEL (40S ribosomal protein S13 OS=Caenorhabditis elegans GN=rps-13 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.752e-23
Identity = 50/65 (76.92%), Postives = 60/65 (92.31%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++YHL+KKAVAIRKHLER+RKD DSK+RLILVESRIHRLARYYK  ++LPP WKYES TA++LV+
Sbjct:   87 DLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARYYKTKRQLPPTWKYESGTAASLVS 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_AGABI (40S ribosomal protein S13 OS=Agaricus bisporus GN=RPS13 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.989e-23
Identity = 48/68 (70.59%), Postives = 61/68 (89.71%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  +++HLIKKAVA+RKH+E NRKDKDSKFRLIL+ESRIHRLARYYK  +++PP +KY+S TASTL+A
Sbjct:   84 IPEDLWHLIKKAVAVRKHMETNRKDKDSKFRLILIESRIHRLARYYKTKQQIPPTFKYDSATASTLIA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_YEAST (40S ribosomal protein S13 OS=Saccharomyces cerevisiae GN=RPS13 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.098e-23
Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLV 210
            +  ++Y+LIKKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYY+    LPP WKYES TAS LV
Sbjct:   84 IPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNWKYESATASALV 150          
The following BLAST results are available for this feature:
BLAST of GE213160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS13_WUCBA3.530e-2476.4740S ribosomal protein S13 OS=Wuchereria bancrofti ... [more]
RS13_SCHPO3.530e-2478.4640S ribosomal protein S13 OS=Schizosaccharomyces p... [more]
RS13_BRUPA3.530e-2476.4740S ribosomal protein S13 OS=Brugia pahangi GN=RPS... [more]
RS13_CIOIN7.865e-2481.5440S ribosomal protein S13 OS=Ciona intestinalis GN... [more]
RS13_CANMA7.865e-2480.0040S ribosomal protein S13 OS=Candida maltosa GN=RP... [more]
RS13_PLUXY1.342e-2381.5440S ribosomal protein S13 OS=Plutella xylostella G... [more]
RS13_GILMI1.752e-2378.4640S ribosomal protein S13 OS=Gillichthys mirabilis... [more]
RS13_CAEEL1.752e-2376.9240S ribosomal protein S13 OS=Caenorhabditis elegan... [more]
RS13_AGABI2.989e-2370.5940S ribosomal protein S13 OS=Agaricus bisporus GN=... [more]
RS13_YEAST5.098e-2373.1340S ribosomal protein S13 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC23 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213160 ID=GE213160; Name=GE213160; organism=Citrus sinensis; type=EST; length=256bp
ATTAGCGTGGTCGCGGCCGAGGTGTACCACCTCATCAAGAAAGCAGTCGC
TATTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTA
GGTTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAG
GAGACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAG
CACTCTCGTGGCATAGGTGAGATATATTTGGTACCTGCCCGGGCGGCCGC
TCGAAA
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