GE213160
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_WUCBA (40S ribosomal protein S13 OS=Wuchereria bancrofti GN=RPS13 PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 3.530e-24 Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 1 Query: 10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 + ++YHLIKKAV IRKHLERNRKDKDSK+RLILVESRIHRLARYYK ++LP WKYES+TAS LV+ Sbjct: 84 IPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATWKYESSTASALVS 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_SCHPO (40S ribosomal protein S13 OS=Schizosaccharomyces pombe GN=rps13 PE=1 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 3.530e-24 Identity = 51/65 (78.46%), Postives = 59/65 (90.77%), Query Frame = 1 Query: 19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 ++Y+LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARYY++ LPP WKYES TAS LVA Sbjct: 87 DLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVGALPPTWKYESATASALVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_BRUPA (40S ribosomal protein S13 OS=Brugia pahangi GN=RPS13 PE=2 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 3.530e-24 Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 1 Query: 10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 + ++YHLIKKAV IRKHLERNRKDKDSK+RLILVESRIHRLARYYK ++LP WKYES+TAS LV+ Sbjct: 84 IPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATWKYESSTASALVS 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_CIOIN (40S ribosomal protein S13 OS=Ciona intestinalis GN=RPS13 PE=2 SV=3) HSP 1 Score: 108.997 bits (271), Expect = 7.865e-24 Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 1 Query: 19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 ++YHLIKKAVA+RKHLERNRKD DSKFRLILVESRIHRL RYYK LPP WKYES TAS LVA Sbjct: 87 DIYHLIKKAVAMRKHLERNRKDTDSKFRLILVESRIHRLGRYYKTKGVLPPNWKYESATASALVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_CANMA (40S ribosomal protein S13 OS=Candida maltosa GN=RPS13 PE=3 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 7.865e-24 Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1 Query: 19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 ++Y LIKKAVA+RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+ LPP WKYES TAS LVA Sbjct: 87 DLYFLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTVSVLPPNWKYESATASALVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_PLUXY (40S ribosomal protein S13 OS=Plutella xylostella GN=RpS13 PE=2 SV=3) HSP 1 Score: 108.227 bits (269), Expect = 1.342e-23 Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1 Query: 19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 ++Y+LIKKAVA+ KHLERNRKDKDSKFRLILVESRIHRLARYYK LPP WKYES+TAS LVA Sbjct: 87 DLYYLIKKAVAMGKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_GILMI (40S ribosomal protein S13 OS=Gillichthys mirabilis GN=rps13 PE=2 SV=3) HSP 1 Score: 107.842 bits (268), Expect = 1.752e-23 Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 1 Query: 19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 ++YHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + L P WKY S+TAS LVA Sbjct: 87 DLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLAPNWKYXSSTASALVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_CAEEL (40S ribosomal protein S13 OS=Caenorhabditis elegans GN=rps-13 PE=2 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 1.752e-23 Identity = 50/65 (76.92%), Postives = 60/65 (92.31%), Query Frame = 1 Query: 19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 ++YHL+KKAVAIRKHLER+RKD DSK+RLILVESRIHRLARYYK ++LPP WKYES TA++LV+ Sbjct: 87 DLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARYYKTKRQLPPTWKYESGTAASLVS 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_AGABI (40S ribosomal protein S13 OS=Agaricus bisporus GN=RPS13 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.989e-23 Identity = 48/68 (70.59%), Postives = 61/68 (89.71%), Query Frame = 1 Query: 10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 + +++HLIKKAVA+RKH+E NRKDKDSKFRLIL+ESRIHRLARYYK +++PP +KY+S TASTL+A Sbjct: 84 IPEDLWHLIKKAVAVRKHMETNRKDKDSKFRLILIESRIHRLARYYKTKQQIPPTFKYDSATASTLIA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_YEAST (40S ribosomal protein S13 OS=Saccharomyces cerevisiae GN=RPS13 PE=1 SV=3) HSP 1 Score: 106.301 bits (264), Expect = 5.098e-23 Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 1 Query: 10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLV 210 + ++Y+LIKKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYY+ LPP WKYES TAS LV Sbjct: 84 IPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNWKYESATASALV 150 The following BLAST results are available for this feature:
BLAST of GE213160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >GE213160 ID=GE213160; Name=GE213160; organism=Citrus sinensis; type=EST; length=256bpback to top |