GE213160

Overview
NameGE213160
Unique NameGE213160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3500 contig Csv1_Contig3500:315..570. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_ANOGA (40S ribosomal protein S13 OS=Anopheles gambiae GN=RpS13 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.695e-23
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++Y LIKKAV+IRKHLERNRKD DSKFRLIL+ESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:   84 IPEDLYFLIKKAVSIRKHLERNRKDIDSKFRLILIESRIHRLARYYKIKAVLPPNWKYESSTASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_DICDI (40S ribosomal protein S13 OS=Dictyostelium discoideum GN=rps13 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.422e-18
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++YHLIKKAV I KHL+R RKD D KF L LVESRIHRL R Y++   L P WKYES  ASTLVA
Sbjct:   84 IPEDLYHLIKKAVTINKHLQRARKDYDGKFHLRLVESRIHRLTRPYRKNGTLAPNWKYESNNASTLVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS15_METVS (30S ribosomal protein S15P/S13e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps15p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.100e-12
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    4 SVVAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLV 210
            S V  ++++L+KKA+ +R HLE N +D  SK  L L+ES+I RL +YYK TK LP  W+Y   TA  LV
Sbjct:   82 SEVPEDLFNLMKKAINLRNHLENNPRDIHSKVGLNLIESKIRRLVKYYKGTKVLPATWRYSPQTARLLV 150          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS15_META3 (30S ribosomal protein S15P/S13e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps15p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.009e-11
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLV 210
            +  ++++L+KKA+ +R HLE N KD  SK  L L ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:   84 IPEDLFNLMKKAINLRNHLEENTKDIHSKRGLQLTESKIRRLVKYYRNTKVLPAKWRYSPETARLLV 150          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS15_IGNH4 (30S ribosomal protein S15P/S13e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps15p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.009e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLV 210
            +  +++HL+K+AV +R HL  + KDK S   L+ +ES+I RL +YYK   KLPP WKY+   A  LV
Sbjct:   82 IPEDLFHLMKRAVRVRAHLAEHPKDKHSARGLMEIESKIRRLVKYYKRVGKLPPDWKYDPERARLLV 148          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS15_HYPBU (30S ribosomal protein S15P/S13e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps15p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.624e-11
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    7 VVAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            VV  +++ LI+KAV +R+HLE + KD  +K  L+ +ES+I RLA YYK   KLP  WKY+   A  LVA
Sbjct:   82 VVPEDLFRLIEKAVNLRRHLEEHPKDTHAKKGLLDLESKIRRLAEYYKRVGKLPRDWKYDPQQAKLLVA 150          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS15_THEPD (30S ribosomal protein S15P/S13e OS=Thermofilum pendens (strain Hrk 5) GN=rps15p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.476e-11
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYE 186
            +  ++ +L+K+A+ +RKHLE + KD  SK  L L+ES+IHRL +YYK    LPP WKYE
Sbjct:   82 IPEDLMNLMKRAIRVRKHLEEHPKDYHSKRGLQLIESKIHRLVKYYKREGILPPDWKYE 140          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS15_PYRKO (30S ribosomal protein S15P/S13e OS=Pyrococcus kodakaraensis GN=rps15p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.476e-11
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLV 210
            +  ++  LI++AV +RKHLE++ KDK S+  L L+ES+I RL +YY+ T KLP  W+Y+   A  LV
Sbjct:   84 IPEDLMFLIRRAVNLRKHLEQHPKDKHSRRGLQLIESKIRRLVKYYRRTGKLPAKWRYDPEQAKLLV 150          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS15_METMP (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis GN=rps15p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.846e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLV 210
            V  ++++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:   84 VPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPETARLLV 150          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS15_METM7 (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps15p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.846e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLV 210
            V  ++++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:   84 VPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPDTARLLV 150          
The following BLAST results are available for this feature:
BLAST of GE213160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS13_ANOGA8.695e-2376.4740S ribosomal protein S13 OS=Anopheles gambiae GN=... [more]
RS13_DICDI8.422e-1864.7140S ribosomal protein S13 OS=Dictyostelium discoid... [more]
RS15_METVS3.100e-1249.2830S ribosomal protein S15P/S13e OS=Methanococcus v... [more]
RS15_META32.009e-1147.7630S ribosomal protein S15P/S13e OS=Methanococcus a... [more]
RS15_IGNH42.009e-1146.2730S ribosomal protein S15P/S13e OS=Ignicoccus hosp... [more]
RS15_HYPBU2.624e-1149.2830S ribosomal protein S15P/S13e OS=Hyperthermus bu... [more]
RS15_THEPD4.476e-1150.8530S ribosomal protein S15P/S13e OS=Thermofilum pen... [more]
RS15_PYRKO4.476e-1146.2730S ribosomal protein S15P/S13e OS=Pyrococcus koda... [more]
RS15_METMP5.846e-1146.2730S ribosomal protein S15P/S13e OS=Methanococcus m... [more]
RS15_METM75.846e-1146.2730S ribosomal protein S15P/S13e OS=Methanococcus m... [more]

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Properties
Property NameValue
Genbank descriptionC23 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213160 ID=GE213160; Name=GE213160; organism=Citrus sinensis; type=EST; length=256bp
ATTAGCGTGGTCGCGGCCGAGGTGTACCACCTCATCAAGAAAGCAGTCGC
TATTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTA
GGTTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAG
GAGACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAG
CACTCTCGTGGCATAGGTGAGATATATTTGGTACCTGCCCGGGCGGCCGC
TCGAAA
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