GE213160

Overview
NameGE213160
Unique NameGE213160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS15_METM5 (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps15p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.846e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLV 210
            V  ++++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:   84 VPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPETARLLV 150
The following BLAST results are available for this feature:
BLAST of GE213160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS15_METM55.846e-1146.2730S ribosomal protein S15P/S13e OS=Methanococcus m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC23 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213160 ID=GE213160; Name=GE213160; organism=Citrus sinensis; type=EST; length=256bp
ATTAGCGTGGTCGCGGCCGAGGTGTACCACCTCATCAAGAAAGCAGTCGC
TATTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTA
GGTTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAG
GAGACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAG
CACTCTCGTGGCATAGGTGAGATATATTTGGTACCTGCCCGGGCGGCCGC
TCGAAA
back to top