GE213155

Overview
NameGE213155
Unique NameGE213155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:137..372. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_CHICK (Eukaryotic translation initiation factor 5A-1 OS=Gallus gallus GN=EIF5A1 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.027e-23
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -1
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R
Sbjct:   21 QCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKR 86          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_BOVIN (Eukaryotic translation initiation factor 5A-1 OS=Bos taurus GN=EIF5A PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.027e-23
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -1
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R
Sbjct:   21 QCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKR 86          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A_DROME (Eukaryotic translation initiation factor 5A OS=Drosophila melanogaster GN=eIF-5A PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.566e-23
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = -1
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++++KSRPCK+VE+STSKTGKHGHAK H VGIDIFS KK EDI PS+HN DVP+V R
Sbjct:   22 QCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKR 87          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A_NEUCR (Eukaryotic translation initiation factor 5A OS=Neurospora crassa GN=tif-51 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.463e-22
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = -1
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +   +RK G++VIK+RPCK+V++STSKTGKHGHAK H V IDIF+GKKLED+ PS+HN DVP+V RT
Sbjct:   28 QCSALRKGGHVVIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLCPSTHNMDVPNVKRT 94          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A_CANAL (Eukaryotic translation initiation factor 5A OS=Candida albicans GN=ANB1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.259e-22
Identity = 44/66 (66.67%), Postives = 58/66 (87.88%), Query Frame = -1
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++VIK+RPCK+V++STSKTGKHGHAK H V IDIF+GKKLED+ PS+HN +VP+V+R
Sbjct:   21 QCSALRKNGHVVIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPNVSR 86          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A2_YEAST (Eukaryotic translation initiation factor 5A-2 OS=Saccharomyces cerevisiae GN=HYP2 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 4.256e-22
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -1
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++VIKSRPCK+V++STSKTGKHGHAK H V IDIF+GKKLED+ PS+HN +VP V R
Sbjct:   22 QCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKR 87          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5AL_HUMAN (Eukaryotic translation initiation factor 5A-1-like OS=Homo sapiens GN=EIF5AL1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.617e-21
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = -1
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++V+K  PCK+VE+S SKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R
Sbjct:   21 QCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKR 86          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_YEAST (Eukaryotic translation initiation factor 5A-1 OS=Saccharomyces cerevisiae GN=HYP1 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.617e-21
Identity = 43/67 (64.18%), Postives = 56/67 (83.58%), Query Frame = -1
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +   +RKNG++VIK RPCK+V++STSKTGKHGHAK H V +DIF+GKKLED+ PS+HN +VP V R+
Sbjct:   22 QCSALRKNGFVVIKGRPCKIVDMSTSKTGKHGHAKVHLVTLDIFTGKKLEDLSPSTHNLEVPFVKRS 88          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A2_SCHPO (Eukaryotic translation initiation factor 5A-2 OS=Schizosaccharomyces pombe GN=tif51b PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.048e-20
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = -1
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++VIK RPCK+V++STSKTGKHGHAK H V +DIF+G+K ED+ PS+HN DVP V R
Sbjct:   23 QCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKR 88          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.048e-20
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = -1
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKN +++IK RPCK+VE+STSKTGKHGHAK H V IDIF+ KKLEDI PS+HN DVP V R
Sbjct:   25 QCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKR 90          
The following BLAST results are available for this feature:
BLAST of GE213155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
IF5A1_CHICK5.027e-2368.18Eukaryotic translation initiation factor 5A-1 OS=G... [more]
IF5A1_BOVIN5.027e-2368.18Eukaryotic translation initiation factor 5A-1 OS=B... [more]
IF5A_DROME6.566e-2369.70Eukaryotic translation initiation factor 5A OS=Dro... [more]
IF5A_NEUCR1.463e-2267.16Eukaryotic translation initiation factor 5A OS=Neu... [more]
IF5A_CANAL3.259e-2266.67Eukaryotic translation initiation factor 5A OS=Can... [more]
IF5A2_YEAST4.256e-2268.18Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5AL_HUMAN1.617e-2165.15Eukaryotic translation initiation factor 5A-1-like... [more]
IF5A1_YEAST1.617e-2164.18Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A2_SCHPO1.048e-2063.64Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A2_CAEEL1.048e-2066.67Eukaryotic translation initiation factor 5A-2 OS=C... [more]

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Properties
Property NameValue
Genbank descriptionC18 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213155 ID=GE213155; Name=GE213155; organism=Citrus sinensis; type=EST; length=236bp
ATTAGCGTGGTCGCGGCCGAGGTACGGTTGACATGGGGAACATCACAGTT
ATGAGAAGAGGGGACAATATCTTCCAGCTTCTTTCCACTGAAGATATCAA
TTCCAACAAAGTGGCACTTAGCATGACCGTGCTTTCCAGTCTTGGAGGTG
GAGACTTCCACAACCTTGCAGGGACGGCTTTTGATGACGATGTAGCCGTT
CTTACGGATGGTACCTGCCCGGGCGGCCGCTCGAAA
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