GE213150

Overview
NameGE213150
Unique NameGE213150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length271
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.846e-18
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   19 RYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            ++SRTVVMQS +   I+P+GW+EW G+FAL TL+Y E+ N G GA TS RVKW  + VIT   EA  +T A  I G +
Sbjct:  452 KHSRTVVMQSYLDGHIDPSGWFEWRGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPNEAMPFTVAELIQGGS 529          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.854e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGS 249
            YSRTV + S +  +I+PAGW EWSG+FAL TL+Y EY+NTG G++T+ RV W  + V T+  E   +T  NFI GS
Sbjct:  231 YSRTVFLLSQMESLIDPAGWLEWSGDFALTTLYYREYKNTGPGSNTTARVTWPGYAVTTNETEVIQFTVGNFIQGS 306          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME25_ARATH (Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            YSRTV MQS ISD++ P GW EW+G   LDT++Y EY N G GA+T+ RV+W  + ++ + AEA  +T  NF  G T
Sbjct:  527 YSRTVFMQSYISDIVQPVGWLEWNGTIGLDTIYYGEYSNFGPGANTNQRVQWLGYNLL-NLAEAMNFTVYNFTMGDT 602          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME47_ARATH (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.147e-17
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            YSRTV +QS ISDV+ P GW EW+G   LDT+ Y EY N G GADTS RV+WS + ++ +  +A  +T  NF  G T
Sbjct:  532 YSRTVYIQSYISDVVQPVGWLEWNGTTGLDTISYGEYDNFGPGADTSKRVQWSGYSLL-NLVQAMNFTVYNFTLGDT 607          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.147e-17
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGS 249
            YSRTV +++++SDV+ P GW EW+ +FALDTLFY E+ N G G+  S+RVKW  + V  ++ +A  +T + FI G+
Sbjct:  434 YSRTVFIRNNMSDVVRPEGWLEWNADFALDTLFYGEFMNYGPGSGLSSRVKWPGYHVFNNSDQANNFTVSQFIKGN 509          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.147e-17
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGS 249
            YSRTV+M+S I D+++PAGW +W  +FAL+TL+Y EY N G G++ +NRV+W  FK I +  EA  ++   FI G+
Sbjct:  429 YSRTVIMKSFIDDLVDPAGWLKWKDDFALETLYYGEYMNEGPGSNMTNRVQWPGFKRIETVEEASQFSVGPFIDGN 504          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.367e-17
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            +SRT++M++ I DVI+PAGW  WSG+FAL TL+YAE+ NTG G++ + RVKW   K +T   +A  YT   F+ G T
Sbjct:  480 FSRTIIMKTTIDDVIDPAGWLPWSGDFALKTLYYAEHMNTGPGSNQAQRVKWPGIKKLT-PQDALLYTGDRFLRGDT 555          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.155e-17
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSG-NFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAAT 264
            YSRT++M+S I +VI+P GW  W   +FA+DTL+YAEY N G+  DT++RVKW  FKVI +  EA  YT   F+ G   +A+
Sbjct:  523 YSRTIIMESKIENVIDPVGWLRWQETDFAIDTLYYAEYNNKGSSGDTTSRVKWPGFKVI-NKEEALNYTVGPFLQGDWISAS 603          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.040e-16
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   10 RPGR-YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            RP R YSRTV+++S I D+I+PAGW E   +FAL+TL+Y EY N G GA+ + RV W  F+ I +  EA  +T   FI GST
Sbjct:  438 RPWRKYSRTVIIKSFIDDLIHPAGWLEGKKDFALETLYYGEYMNEGPGANMAKRVTWPGFRRIENQTEATQFTVGPFIDGST 519          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME19_ARATH (Probable pectinesterase/pectinesterase inhibitor 19 OS=Arabidopsis thaliana GN=PME19 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.040e-16
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   10 RPGR-YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            RP R +S   VMQS I D+++PAGW  W G   L TL Y EYQN G GA TS RVKWS FKV+    +A  +T A  + G T
Sbjct:  430 RPWRIFSTVAVMQSFIGDLVDPAGWTPWEGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFTVAKLLDGET 511          
The following BLAST results are available for this feature:
BLAST of GE213150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PME3_SOLLC2.846e-1852.56Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME_ACTDE4.854e-1852.63Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME25_ARATH1.412e-1750.65Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME47_ARATH3.147e-1751.95Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME44_ARATH3.147e-1747.37Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME40_ARATH3.147e-1748.68Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME23_ARATH5.367e-1750.65Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME13_ARATH9.155e-1750.00Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME39_ARATH2.040e-1651.22Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME19_ARATH2.040e-1651.22Probable pectinesterase/pectinesterase inhibitor 1... [more]

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Properties
Property NameValue
Genbank descriptionC13 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213150 ID=GE213150; Name=GE213150; organism=Citrus sinensis; type=EST; length=271bp
ATTTAGCGCCGCCCGGGCAGGTACTCGAGGACTGTTGTGATGCAATCTGA
TATAAGTGATGTTATTAACCCAGCTGGGTGGTATGAATGGAGTGGGAATT
TTGCATTGGACACATTGTTTTATGCAGAGTATCAAAACACAGGTGCTGGT
GCTGACACATCGAATAGGGTGAAATGGAGCACATTCAAGGTGATTACTAG
TGCAGCTGAGGCTCAAACTTATACAGCTGCGAATTTTATTGCAGGGAGTA
CCTCGGCCGCGACCACGCTAA
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