FK826729

Overview
NameFK826729
Unique NameFK826729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6856 contig Csv1_Contig6856:1..288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSA_IPONI (Chalcone synthase A (Fragment) OS=Ipomoea nil GN=CHSA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.435e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   76 TMVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            T++T    R+ +R +G A  +AIGTA P N VDQ+TYPD+YFRITNSEH+ + KEKF+R+C+KS I+KR++
Sbjct:    3 TILTNTWTRREKRIEGHAKILAIGTAIPANWVDQTTYPDFYFRITNSEHLLEHKEKFRRICNKSKIRKRHL 73          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSC_IPOPU (Chalcone synthase C (Fragment) OS=Ipomoea purpurea GN=CHSC PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.874e-17
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   76 TMVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            T++T    R+ +R  G A  +AIGTA P N VDQ+TYPD+YFRITNSEH+ + KEKF+R+C+KS I+KR++
Sbjct:    6 TILTDTWTRREKRFDGHAKILAIGTAIPANWVDQTTYPDFYFRITNSEHLLEYKEKFRRICNKSKIRKRHL 76          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTF (Chalcone synthase B (Fragment) OS=Ipomoea trifida GN=CHSB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.447e-17
Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   76 TMVTVDEVRKAQR--AQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            TM+T    R+A+R   +G A  +AIGTATP N VDQ+TYPD+YFRITNS+H+ + KEKF+R+C+KS I+KR+M
Sbjct:    6 TMLTDTWSRRAKRFEIEGYAKILAIGTATPANWVDQTTYPDFYFRITNSQHLLEHKEKFRRICNKSNIRKRHM 78          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSA_IPOTF (Chalcone synthase A (Fragment) OS=Ipomoea trifida GN=CHSA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.447e-17
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  106 AQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            A+R +G A  +AIGTATP N VDQ+TYPD+YFRITNSEH+ + KEKF+R+C+KS I+KR++
Sbjct:   14 AKRFEGHAKLLAIGTATPTNWVDQATYPDFYFRITNSEHLLEHKEKFRRICNKSKIRKRHL 74          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSA_IPOCO (Chalcone synthase A (Fragment) OS=Ipomoea cordatotriloba GN=CHSA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.447e-17
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  106 AQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            A+R +G A  +AIGTATP N VDQ+TYPD+YFRITNSEH+ + KEKF+R+C+KS I+KR++
Sbjct:   14 AKRFEGHAKLLAIGTATPTNWVDQATYPDFYFRITNSEHLLEHKEKFRRICNKSKIRKRHL 74          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSB_IPONI (Chalcone synthase B (Fragment) OS=Ipomoea nil GN=CHSB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.298e-17
Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 1
Query:  103 KAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            +A++ +G A   AIGTATP N VDQ+TYPD+YFRITNS+H+ + KEKF+R+C+KS I+KR++
Sbjct:   15 RAKKLEGDAKIWAIGTATPANWVDQTTYPDFYFRITNSQHLLEHKEKFRRICNKSKIRKRHL 76          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTR (Chalcone synthase B (Fragment) OS=Ipomoea triloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.586e-16
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   76 TMVTVDEVRKAQR--AQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            T++T    R+A+R   +G A  +AIGTATP N VDQ+TYPD+YFRITNS+H+ + KEKF+R+C+KS I+KR++
Sbjct:    6 TVLTDTWGRRAKRFEIEGYAKILAIGTATPANWVDQTTYPDFYFRITNSQHLLEHKEKFRRICNKSKIRKRHL 78          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSA_IPOTR (Chalcone synthase A (Fragment) OS=Ipomoea triloba GN=CHSA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.754e-15
Identity = 37/61 (60.66%), Postives = 50/61 (81.97%), Query Frame = 1
Query:  106 AQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            A+R +G A  +AIGTATP N VDQ+TYPD+YFRITNSE + + KEKF+R+C+KS I+ R++
Sbjct:   14 AKRFEGHAKLLAIGTATPTNWVDQATYPDFYFRITNSERLLEHKEKFRRICNKSKIRFRHL 74          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: VPS_PSINU (Phloroisovalerophenone synthase OS=Psilotum nudum GN=VPS PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.991e-15
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  100 RKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            RK +RA GP + +AIG+A PPN   QS +PD+YF IT S HM ++K KF RMC KS IKKR M
Sbjct:   15 RKKERASGPVSVLAIGSANPPNVFHQSLFPDFYFNITQSNHMAEVKAKFTRMCAKSGIKKRRM 77          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: TBSYN_HYPAN (Trihydroxybenzophenone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.146e-13
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 1
Query:  127 ATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRY 285
            A+ +AIGT  P + + Q  YPD+YFR TNSEHMT+LKEKFKR+C KS I+KR+
Sbjct:   20 ASVLAIGTTNPEHFILQEDYPDFYFRNTNSEHMTELKEKFKRICVKSHIRKRH 72          
The following BLAST results are available for this feature:
BLAST of FK826729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHSA_IPONI1.435e-1756.34Chalcone synthase A (Fragment) OS=Ipomoea nil GN=C... [more]
CHSC_IPOPU1.874e-1756.34Chalcone synthase C (Fragment) OS=Ipomoea purpurea... [more]
CHSB_IPOTF2.447e-1758.90Chalcone synthase B (Fragment) OS=Ipomoea trifida ... [more]
CHSA_IPOTF2.447e-1763.93Chalcone synthase A (Fragment) OS=Ipomoea trifida ... [more]
CHSA_IPOCO2.447e-1763.93Chalcone synthase A (Fragment) OS=Ipomoea cordatot... [more]
CHSB_IPONI9.298e-1759.68Chalcone synthase B (Fragment) OS=Ipomoea nil GN=C... [more]
CHSB_IPOTR1.586e-1656.16Chalcone synthase B (Fragment) OS=Ipomoea triloba ... [more]
CHSA_IPOTR1.754e-1560.66Chalcone synthase A (Fragment) OS=Ipomoea triloba ... [more]
VPS_PSINU2.991e-1558.73Phloroisovalerophenone synthase OS=Psilotum nudum ... [more]
TBSYN_HYPAN8.146e-1362.26Trihydroxybenzophenone synthase OS=Hypericum andro... [more]

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Properties
Property NameValue
Genbank descriptionclone507 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 507, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826729 ID=FK826729; Name=FK826729; organism=Citrus sinensis; type=EST; length=288bp
ACGCGGGATACAAAGTTATAAAACATCAACAAGAGCTAGATAGGTCTCCG
GGAACCGCTCGATTGGAAGCAACAAACAATGGTGACCGTCGATGAAGTTC
GCAAGGCTCAACGTGCCCAAGGTCCGGCCACGAACATGGCCATTGGAACG
GCAACTCCACCGAATTGTGTTGATCAAAGCACGTATCCGGATTATTATTT
TCGCATCACAAATAGTGAACACATGACTGATCTTAAAGAGAAATTCAAGC
GCATGTGTGACAAATCCATGATCAAGAAGCGATACATG
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