FK826729

Overview
NameFK826729
Unique NameFK826729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS5_MEDSA (Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.171e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+R AQRA+GPAT +AIGTA P NCV+QSTYPD+YF+ITNSEH T+LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVSEIRNAQRAEGPATTLAIGTANPTNCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.171e-27
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 1
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            VTV+EVRKAQRA GPAT +AIGTATP NCV Q+ YPDYYFRIT SEHMT+LKEKFKRMCDKS I+KRYM
Sbjct:    6 VTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYM 74          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS2_SORBI (Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.171e-27
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 1
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            VTV+EVRKAQRA GPAT +AIGTATP NCV Q+ YPDYYFRIT SEHMT+LKEKFKRMCDKS I+KRYM
Sbjct:    6 VTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYM 74          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS1_SORBI (Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.171e-27
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 1
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            VTV+EVRKAQRA GPAT +AIGTATP NCV Q+ YPDYYFRIT SEHMT+LKEKFKRMCDKS I+KRYM
Sbjct:    6 VTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYM 74          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSY_HYDMC (Chalcone synthase OS=Hydrangea macrophylla GN=CHS PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.997e-27
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MVTV+EVRKAQRA+GPAT +AIGTATPPN VDQSTYPD+YFR+TNSEH  +LK KF+RMCD S IKKRYM
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTATPPNYVDQSTYPDFYFRVTNSEHKKELKAKFQRMCDNSQIKKRYM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS7_PICMA (Chalcone synthase 7 OS=Picea mariana GN=CSF7 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.997e-27
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M  ++  RKAQRA GPAT +AIGTATPPN VDQSTYPDYYF+ITNSEHMT+LKEKF+RMCDKS IKKRYM
Sbjct:    6 MADLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFQRMCDKSAIKKRYM 75          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.997e-27
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 1
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            VTV+E+RKAQRA GPAT +AIGTATP N V Q+ YPDYYFRIT SEHMTDLKEKFKRMCDKSMI+KRYM
Sbjct:    4 VTVEEIRKAQRADGPATVLAIGTATPANYVTQADYPDYYFRITKSEHMTDLKEKFKRMCDKSMIRKRYM 72          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSY_PINST (Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.608e-27
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M  ++  RKAQRA GPAT +AIGTATPPN VDQSTYPDYYF+ITNSEHMT+LKEKF+RMCDKS IKKRYM
Sbjct:    6 MADLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSGIKKRYM 75          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS5_PEA (Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.608e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+RKAQRA+GPAT +AIGTA P NCV+QSTYPD+YFRITNSEH T+LK+KF+RMCDKSMI +RYM
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKTELKQKFQRMCDKSMINRRYM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS3_PEA (Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.608e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+RKAQRA+GPAT +AIGTA P NCV+QSTYPD+YFRITNSEH T+LK+KF+RMCDKSMI +RYM
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKTELKQKFQRMCDKSMINRRYM 70          
The following BLAST results are available for this feature:
BLAST of FK826729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS5_MEDSA1.171e-2777.14Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2... [more]
CHS4_SORBI1.171e-2782.61Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]
CHS2_SORBI1.171e-2782.61Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=... [more]
CHS1_SORBI1.171e-2782.61Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=... [more]
CHSY_HYDMC1.997e-2780.00Chalcone synthase OS=Hydrangea macrophylla GN=CHS ... [more]
CHS7_PICMA1.997e-2780.00Chalcone synthase 7 OS=Picea mariana GN=CSF7 PE=2 ... [more]
CHS3_RUTGR1.997e-2782.61Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHSY_PINST2.608e-2780.00Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=... [more]
CHS5_PEA2.608e-2777.14Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 ... [more]
CHS3_PEA2.608e-2777.14Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionclone507 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 507, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826729 ID=FK826729; Name=FK826729; organism=Citrus sinensis; type=EST; length=288bp
ACGCGGGATACAAAGTTATAAAACATCAACAAGAGCTAGATAGGTCTCCG
GGAACCGCTCGATTGGAAGCAACAAACAATGGTGACCGTCGATGAAGTTC
GCAAGGCTCAACGTGCCCAAGGTCCGGCCACGAACATGGCCATTGGAACG
GCAACTCCACCGAATTGTGTTGATCAAAGCACGTATCCGGATTATTATTT
TCGCATCACAAATAGTGAACACATGACTGATCTTAAAGAGAAATTCAAGC
GCATGTGTGACAAATCCATGATCAAGAAGCGATACATG
back to top