FK826729

Overview
NameFK826729
Unique NameFK826729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6856 contig Csv1_Contig6856:1..288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS9_MEDSA (Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.406e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+R+AQRA+GPAT MAIGTA P NCV+QSTYPD+YF+ITNSEH  +LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVSEIRQAQRAEGPATIMAIGTANPANCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYM 70
[Close]
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS8_MEDSA (Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.406e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+R AQRA+GPAT +AIGTA P NCV+QSTYPD+YF+ITNSEH T+LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVSEIRTAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYM 70
[Close]
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS3_MEDSA (Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.406e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+R+AQRA+GPAT MAIGTA P NCV+QSTYPD+YF+ITNSEH  +LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVSEIRQAQRAEGPATIMAIGTANPSNCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYM 70
[Close]
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS1_MEDSA (Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.811e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+R+AQRA+GPAT MAIGTA P NCV+QSTYPD+YF+ITNSEH  +LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVAEIRQAQRAEGPATIMAIGTANPANCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYM 70
[Close]
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSY_PINSY (Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.589e-27
Identity = 55/70 (78.57%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M  ++  RKAQRA GPAT +AIGTATPPN VDQS+YPDYYF+ITNSEHMT+LKEKF+RMCDKS IKKRYM
Sbjct:    6 MKDLEAFRKAQRADGPATILAIGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYM 75
[Close]
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.589e-27
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            VTV+EVR+AQRA+GPAT +AIGTATP NCV Q+ YPDYYFRIT SEHM +LKEKFKRMCDKS I+KRYM
Sbjct:    5 VTVEEVRRAQRAEGPATVLAIGTATPANCVYQADYPDYYFRITKSEHMVELKEKFKRMCDKSQIRKRYM 73
[Close]
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.589e-27
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            VTV+EVR+AQRA+GPAT +AIGTATP NCV Q+ YPDYYFRIT SEHM +LKEKFKRMCDKS I+KRYM
Sbjct:    5 VTVEEVRRAQRAEGPATVLAIGTATPANCVYQADYPDYYFRITKSEHMVELKEKFKRMCDKSQIRKRYM 73
[Close]
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSY_DIAMO (Chalcone synthase OS=Dianthus monspessulanus GN=CHS PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.911e-27
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M +++E+R+AQRA GPAT +AIGTATPPN + Q+ YPDYYFR+T SEHMT+LKEKF+RMCDKSMIKKRYM
Sbjct:    1 MASIEEIRQAQRADGPATILAIGTATPPNAIYQADYPDYYFRVTKSEHMTELKEKFRRMCDKSMIKKRYM 70
[Close]
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS1_PEA (Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.911e-27
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+RK QRA+GPAT +AIGTA P NCV+QSTYPD+YF+ITNSEH T LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVSEIRKPQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYM 70
[Close]
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS4_PEA (Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.294e-26
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+RKAQRA+GPAT +AIGTA P NCV+QSTYPD+YFRITNSEH  +LK+KF+RMCDKSMI +RYM
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKIELKQKFQRMCDKSMINRRYM 70
The following BLAST results are available for this feature:
BLAST of FK826729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS9_MEDSA3.406e-2777.14Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=... [more]
CHS8_MEDSA3.406e-2777.14Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=... [more]
CHS3_MEDSA3.406e-2777.14Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1... [more]
CHS1_MEDSA5.811e-2777.14Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=... [more]
CHSY_PINSY7.589e-2778.57Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 ... [more]
CHSY_ORYSJ7.589e-2779.71Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI7.589e-2779.71Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHSY_DIAMO9.911e-2774.29Chalcone synthase OS=Dianthus monspessulanus GN=CH... [more]
CHS1_PEA9.911e-2777.14Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 ... [more]
CHS4_PEA1.294e-2675.71Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionclone507 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 507, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826729 ID=FK826729; Name=FK826729; organism=Citrus sinensis; type=EST; length=288bp
ACGCGGGATACAAAGTTATAAAACATCAACAAGAGCTAGATAGGTCTCCG
GGAACCGCTCGATTGGAAGCAACAAACAATGGTGACCGTCGATGAAGTTC
GCAAGGCTCAACGTGCCCAAGGTCCGGCCACGAACATGGCCATTGGAACG
GCAACTCCACCGAATTGTGTTGATCAAAGCACGTATCCGGATTATTATTT
TCGCATCACAAATAGTGAACACATGACTGATCTTAAAGAGAAATTCAAGC
GCATGTGTGACAAATCCATGATCAAGAAGCGATACATG
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