FK826729

Overview
NameFK826729
Unique NameFK826729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS2_SECCE (Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.294e-26
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 1
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            +TV+EVRKAQRA+GPAT +AIGTATP NCV Q+ YPDYYF+IT S+HM DLKEKFKRMCDKS I+KRYM
Sbjct:    5 MTVEEVRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYM 73          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS1_SECCE (Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.294e-26
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 1
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            +TV+EVRKAQRA+GPAT +AIGTATP NCV Q+ YPDYYF+IT S+HM DLKEKFKRMCDKS I+KRYM
Sbjct:    5 MTVEEVRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYM 73          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.208e-26
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            VTV+E+RKAQRA GPA  +AIGTATP N V Q+ YPDYYFRIT SEHMT+LKEKFKRMCDKSMI+KRYM
Sbjct:    4 VTVEEIRKAQRADGPAAVLAIGTATPANYVTQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIRKRYM 72          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.208e-26
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M TV E+R AQRA GPAT +AIGTATP + V+Q+ YPDYYFRIT SEHMT+LKEKFKRMCDKSMIKKRYM
Sbjct:    1 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS9_DAUCA (Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.884e-26
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MVTV+E RKAQRA+GPAT +AIGTATPPNCVDQS Y DYYFRITNSE   +LKEKF+RMC+KSMI  RYM
Sbjct:    1 MVTVNEFRKAQRAEGPATVLAIGTATPPNCVDQSAYADYYFRITNSEDKPELKEKFRRMCEKSMINTRYM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS1_DAUCA (Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.884e-26
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MVTV+E RKAQRA+GPAT +AIGTATPPNCVDQS Y DYYFRITNSE   +LKEKF+RMC+KSMI  RYM
Sbjct:    1 MVTVNEFRKAQRAEGPATVLAIGTATPPNCVDQSAYADYYFRITNSEDKPELKEKFRRMCEKSMINTRYM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.766e-26
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            ++ V+ +RKAQRA+GPAT +AIGTATP NCV Q+ YPDYYFR+T SEHM DLKEKF+RMCDKSMI+KRYM
Sbjct:    7 VIDVETIRKAQRAEGPATILAIGTATPANCVYQADYPDYYFRVTESEHMVDLKEKFQRMCDKSMIRKRYM 76          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSY_DIACA (Chalcone synthase OS=Dianthus caryophyllus GN=CHS PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.919e-26
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M +++E+R+A RA GPAT +AIGTATPPN + Q+ YPDYYFR+T SEHMT+LKEKF+RMCDKSMIKKRYM
Sbjct:    1 MASIEEIRQAPRADGPATILAIGTATPPNAIYQADYPDYYFRVTKSEHMTELKEKFRRMCDKSMIKKRYM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS1_TRISU (Chalcone synthase 1 OS=Trifolium subterraneum GN=CHS1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.919e-26
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+RKAQRA+GPAT +AIGTA PPN V+Q+TYPD+YF+ITNSEH  +LKEKF+RMCDKSMIK RYM
Sbjct:    1 MVSVAEIRKAQRAEGPATILAIGTANPPNRVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS1_HORVU (Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.919e-26
Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = 1
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            +TV+EVR AQRA+GPAT +AIGTATP NCV Q+ YPDYYF+IT S+HM DLKEKFKRMCDKS I+KRYM
Sbjct:    5 MTVEEVRNAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYM 73          
The following BLAST results are available for this feature:
BLAST of FK826729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS2_SECCE1.294e-2678.26Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2... [more]
CHS1_SECCE1.294e-2678.26Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3... [more]
CHS2_RUTGR2.208e-2679.71Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHS2_CITSI2.208e-2678.57Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHS9_DAUCA2.884e-2678.57Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 ... [more]
CHS1_DAUCA2.884e-2678.57Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 ... [more]
CHS3_GERHY3.766e-2674.29Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHSY_DIACA4.919e-2672.86Chalcone synthase OS=Dianthus caryophyllus GN=CHS ... [more]
CHS1_TRISU4.919e-2675.71Chalcone synthase 1 OS=Trifolium subterraneum GN=C... [more]
CHS1_HORVU4.919e-2676.81Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionclone507 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 507, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826729 ID=FK826729; Name=FK826729; organism=Citrus sinensis; type=EST; length=288bp
ACGCGGGATACAAAGTTATAAAACATCAACAAGAGCTAGATAGGTCTCCG
GGAACCGCTCGATTGGAAGCAACAAACAATGGTGACCGTCGATGAAGTTC
GCAAGGCTCAACGTGCCCAAGGTCCGGCCACGAACATGGCCATTGGAACG
GCAACTCCACCGAATTGTGTTGATCAAAGCACGTATCCGGATTATTATTT
TCGCATCACAAATAGTGAACACATGACTGATCTTAAAGAGAAATTCAAGC
GCATGTGTGACAAATCCATGATCAAGAAGCGATACATG
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