FK826729

Overview
NameFK826729
Unique NameFK826729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6856 contig Csv1_Contig6856:1..288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.096e-25
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 1
Query:   88 VDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            ++E+R AQRA+GPAT +AIGTATP NCV Q+ YPD+YFRITNSEH T+LKEKF+RMCDKSMIKKRYM
Sbjct:    7 MEEIRNAQRAEGPATILAIGTATPANCVIQADYPDFYFRITNSEHKTELKEKFQRMCDKSMIKKRYM 73          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS6_TRISU (Chalcone synthase 6 OS=Trifolium subterraneum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.096e-25
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+RKAQRA+GPAT +AIGTA P N V+Q+TYPD+YF+ITNSEH T+LKEKF+RMCDKSMIK RYM
Sbjct:    1 MVSVAEIRKAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKTELKEKFQRMCDKSMIKSRYM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.096e-25
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            VTV+ +RKAQRA GPA  +AIGTATP N V Q+ YPDYYFRIT SEHMT+LKEKFKRMCDKSMI+KRYM
Sbjct:    4 VTVEAIRKAQRADGPAAVLAIGTATPANYVTQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIRKRYM 72          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.431e-25
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 1
Query:   88 VDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            ++E+RK QRAQGPA  +AIGTATP NCV Q+ YPDYYFRITNSEHM+DLK KFKRMC+KSMI+KRYM
Sbjct:    8 IEEIRKRQRAQGPANILAIGTATPSNCVYQADYPDYYFRITNSEHMSDLKLKFKRMCEKSMIRKRYM 74          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.869e-25
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 1
Query:   88 VDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            ++E+R  QRAQGPA  +AIGTATP NCV Q+ YPDYYFRITNSEHMTDLK KFKRMC+KSMI+KRYM
Sbjct:    9 IEEIRNRQRAQGPANILAIGTATPSNCVYQADYPDYYFRITNSEHMTDLKLKFKRMCEKSMIRKRYM 75          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: THS3_ARAHY (Stilbene synthase 3 OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.441e-25
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V  +RK QRA+GPAT +AIGTA PPNC+DQSTY DYYFR+TNSEHMTDLK+KF+R+C+++ IK R+M
Sbjct:    1 MVSVSGIRKVQRAEGPATVLAIGTANPPNCIDQSTYADYYFRVTNSEHMTDLKKKFQRICERTQIKNRHM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSY_CALCH (Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.441e-25
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            + +  +R+AQR QGPAT +AIGTATP NCV Q+ YPDYYFRIT SEHM DLKEKFKRMCDKSMI+KRYM
Sbjct:    5 IDIAAIREAQRRQGPATILAIGTATPSNCVYQADYPDYYFRITKSEHMVDLKEKFKRMCDKSMIRKRYM 73          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSF_PETHY (Chalcone synthase F OS=Petunia hybrida GN=CHSF PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.441e-25
Identity = 51/70 (72.86%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V+EVR+AQR +GPAT +AIGTATP NCVDQ+TYPDY+FR+TNS+H T+LKEKFKRM ++SMIKK Y+
Sbjct:    1 MVSVEEVRRAQRREGPATILAIGTATPLNCVDQTTYPDYFFRVTNSDHKTELKEKFKRMFERSMIKKSYL 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.441e-25
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+RKAQRA+GPAT +AIGTA P N V+Q+TYPD+YF+ITNSEH  +LKEKF+RMCDKSMIK RYM
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS2_TRISU (Chalcone synthase 2 OS=Trifolium subterraneum GN=CHS2 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.441e-25
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+RKAQRA+GPAT +AIGTA P N V+Q+TYPD+YF+ITNSEH  +LKEKF+RMCDKSMIK RYM
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANRVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYM 70          
The following BLAST results are available for this feature:
BLAST of FK826729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHSY_CHRAE1.096e-2577.61Chalcone synthase OS=Chrysosplenium americanum GN=... [more]
CHS6_TRISU1.096e-2575.71Chalcone synthase 6 OS=Trifolium subterraneum GN=C... [more]
CHS1_RUTGR1.096e-2578.26Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHS2_DAUCA1.431e-2577.61Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHSY_PETCR1.869e-2577.61Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
THS3_ARAHY2.441e-2570.00Stilbene synthase 3 OS=Arachis hypogaea PE=2 SV=1[more]
CHSY_CALCH2.441e-2575.36Chalcone synthase OS=Callistephus chinensis GN=CHS... [more]
CHSF_PETHY2.441e-2572.86Chalcone synthase F OS=Petunia hybrida GN=CHSF PE=... [more]
CHS4_TRISU2.441e-2574.29Chalcone synthase 4 (Fragment) OS=Trifolium subter... [more]
CHS2_TRISU2.441e-2574.29Chalcone synthase 2 OS=Trifolium subterraneum GN=C... [more]

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Properties
Property NameValue
Genbank descriptionclone507 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 507, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826729 ID=FK826729; Name=FK826729; organism=Citrus sinensis; type=EST; length=288bp
ACGCGGGATACAAAGTTATAAAACATCAACAAGAGCTAGATAGGTCTCCG
GGAACCGCTCGATTGGAAGCAACAAACAATGGTGACCGTCGATGAAGTTC
GCAAGGCTCAACGTGCCCAAGGTCCGGCCACGAACATGGCCATTGGAACG
GCAACTCCACCGAATTGTGTTGATCAAAGCACGTATCCGGATTATTATTT
TCGCATCACAAATAGTGAACACATGACTGATCTTAAAGAGAAATTCAAGC
GCATGTGTGACAAATCCATGATCAAGAAGCGATACATG
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