FK826729

Overview
NameFK826729
Unique NameFK826729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6856 contig Csv1_Contig6856:1..288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS1_GERHY (Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.441e-25
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            V +  +R AQRA+GPAT +AIGTATP NCV Q+ YPDYYFRIT SEHM DLKEKFKRMCDKSMI+KRYM
Sbjct:    5 VDMKAIRDAQRAEGPATILAIGTATPANCVYQADYPDYYFRITKSEHMVDLKEKFKRMCDKSMIRKRYM 73          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS1_CICAR (Chalcone synthase 1 OS=Cicer arietinum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.441e-25
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+RKAQRA+GPAT +AIGTA P N V+QSTYPD+YF+ITNSEH  +LK+KF+RMCDKSMIK RYM
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPSNRVEQSTYPDFYFKITNSEHKVELKQKFQRMCDKSMIKSRYM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: VPS_HUMLU (Phloroisovalerophenone synthase OS=Humulus lupulus GN=VPS PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.438e-25
Identity = 49/69 (71.01%), Postives = 62/69 (89.86%), Query Frame = 1
Query:   82 VTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            VTV+++RKAQRA+GPAT +AIGTA P NC +Q+ +PDYYFR+T SEHMTDLK+KF+RMC+KS IKKRY+
Sbjct:    4 VTVEQIRKAQRAEGPATILAIGTAVPANCFNQADFPDYYFRVTKSEHMTDLKKKFQRMCEKSTIKKRYL 72          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: THS1_ARAHY (Stilbene synthase 1 OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.438e-25
Identity = 49/70 (70.00%), Postives = 61/70 (87.14%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V  +RK QRA+GPAT +AIGTA PPNCVDQSTY DYYFR+TN EHMTDLK+KF+R+C+++ IK R+M
Sbjct:    1 MVSVSGIRKVQRAEGPATVLAIGTANPPNCVDQSTYADYYFRVTNGEHMTDLKKKFQRICERTQIKNRHM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHSG_PETHY (Chalcone synthase G OS=Petunia hybrida GN=CHSG PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.438e-25
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M TV+E+RKAQRA+GPAT +AIGTA P NCVDQS YPD+ FRIT S+H T+LKEKFK MC+ SMIKKRY+
Sbjct:    1 MATVEEIRKAQRAEGPATVLAIGTANPSNCVDQSAYPDFLFRITTSDHKTELKEKFKHMCEGSMIKKRYL 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS8_BROFI (Chalcone synthase 8 OS=Bromheadia finlaysoniana GN=CHS8 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.438e-25
Identity = 50/67 (74.63%), Postives = 61/67 (91.04%), Query Frame = 1
Query:   88 VDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            ++E+R+AQRA+GPA  +AIGT+TPPN + Q+ YPDYYFRIT SEH+T+LKEKFKRMCDKSMIKKRYM
Sbjct:    5 MEEIRQAQRAEGPAAVLAIGTSTPPNALYQADYPDYYFRITKSEHLTELKEKFKRMCDKSMIKKRYM 71          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS4_BROFI (Chalcone synthase 4 OS=Bromheadia finlaysoniana GN=CHS4 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.438e-25
Identity = 50/67 (74.63%), Postives = 61/67 (91.04%), Query Frame = 1
Query:   88 VDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            ++E+R+AQRA+GPA  +AIGT+TPPN + Q+ YPDYYFRIT SEH+T+LKEKFKRMCDKSMIKKRYM
Sbjct:    5 MEEIRQAQRAEGPAAVLAIGTSTPPNALYQADYPDYYFRITKSEHLTELKEKFKRMCDKSMIKKRYM 71          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS3_BROFI (Chalcone synthase 3 OS=Bromheadia finlaysoniana GN=CHS3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.438e-25
Identity = 50/67 (74.63%), Postives = 61/67 (91.04%), Query Frame = 1
Query:   88 VDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            ++E+R+AQRA+GPA  +AIGT+TPPN + Q+ YPDYYFRIT SEH+T+LKEKFKRMCDKSMIKKRYM
Sbjct:    5 MEEIRQAQRAEGPAAVLAIGTSTPPNALYQADYPDYYFRITKSEHLTELKEKFKRMCDKSMIKKRYM 71          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS3_TRISU (Chalcone synthase 3 OS=Trifolium subterraneum GN=CHS3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.103e-25
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+R+AQRA+GPAT +AIGTA P N V+Q+TYPD+YF+ITNSEH  +LKEKF+RMCDKSMIK RYM
Sbjct:    1 MVSVSEIRQAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYM 70          
BLAST of FK826729 vs. ExPASy Swiss-Prot
Match: CHS5_TRISU (Chalcone synthase 5 OS=Trifolium subterraneum GN=CHS5 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.212e-24
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   79 MVTVDEVRKAQRAQGPATNMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            MV+V E+R+AQRA+GPAT +AIGTA P N V+Q+TYPD+YF+ITNSEH  +LKEKF+RMCDKSMIK RYM
Sbjct:    1 MVSVAEIRQAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYM 70          
The following BLAST results are available for this feature:
BLAST of FK826729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS1_GERHY2.441e-2576.81Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=... [more]
CHS1_CICAR2.441e-2574.29Chalcone synthase 1 OS=Cicer arietinum GN=CHS1 PE=... [more]
VPS_HUMLU5.438e-2571.01Phloroisovalerophenone synthase OS=Humulus lupulus... [more]
THS1_ARAHY5.438e-2570.00Stilbene synthase 1 OS=Arachis hypogaea PE=2 SV=1[more]
CHSG_PETHY5.438e-2572.86Chalcone synthase G OS=Petunia hybrida GN=CHSG PE=... [more]
CHS8_BROFI5.438e-2574.63Chalcone synthase 8 OS=Bromheadia finlaysoniana GN... [more]
CHS4_BROFI5.438e-2574.63Chalcone synthase 4 OS=Bromheadia finlaysoniana GN... [more]
CHS3_BROFI5.438e-2574.63Chalcone synthase 3 OS=Bromheadia finlaysoniana GN... [more]
CHS3_TRISU7.103e-2572.86Chalcone synthase 3 OS=Trifolium subterraneum GN=C... [more]
CHS5_TRISU1.212e-2472.86Chalcone synthase 5 OS=Trifolium subterraneum GN=C... [more]

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Properties
Property NameValue
Genbank descriptionclone507 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 507, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826729 ID=FK826729; Name=FK826729; organism=Citrus sinensis; type=EST; length=288bp
ACGCGGGATACAAAGTTATAAAACATCAACAAGAGCTAGATAGGTCTCCG
GGAACCGCTCGATTGGAAGCAACAAACAATGGTGACCGTCGATGAAGTTC
GCAAGGCTCAACGTGCCCAAGGTCCGGCCACGAACATGGCCATTGGAACG
GCAACTCCACCGAATTGTGTTGATCAAAGCACGTATCCGGATTATTATTT
TCGCATCACAAATAGTGAACACATGACTGATCTTAAAGAGAAATTCAAGC
GCATGTGTGACAAATCCATGATCAAGAAGCGATACATG
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