FK826725

Overview
NameFK826725
Unique NameFK826725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_HAECO (Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.294e-35
Identity = 68/101 (67.33%), Postives = 83/101 (82.18%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKK+KL F++YP+PQVSTAVVE YNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERP+YTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKAKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 4.748e-34
Identity = 67/101 (66.34%), Postives = 82/101 (81.19%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            V+YGKKSKLGF+IYP+PQVSTA+V+ YNS+L+TH+ LEH+D A ++DN+AIYDIC  +LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:   98 VNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 198          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.201e-34
Identity = 68/101 (67.33%), Postives = 79/101 (78.22%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            V+YGKKSKL F IYP+PQ S+AVVE YNSVL+TH+ LEH+D   ++DNEAIYDIC R+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  156 VEYGKKSKLEFAIYPAPQASSAVVEPYNSVLTTHTTLEHSDCVFMVDNEAIYDICHRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 256          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.019e-33
Identity = 65/101 (64.36%), Postives = 80/101 (79.21%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F++YP+PQVST+VVE YNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERP Y NLNR             RFDG++NVD+ EFQTNL
Sbjct:  159 VDYGKKSKLEFSVYPAPQVSTSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPGYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.403e-32
Identity = 66/98 (67.35%), Postives = 77/98 (78.57%), Query Frame = 1
Query:   52 GKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            GKKSKL F +YPSPQVST+VVE YNSVLSTHSLLEHTDV+ +LDNEAIY+IC++SLDIE+PTYTNLNR             RF G +N+DI + QTNL
Sbjct:   71 GKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFMLDNEAIYNICKKSLDIEKPTYTNLNRLIAQVISSLTSSLRFPGPLNLDINDIQTNL 168          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.403e-32
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 1
Query:   43 VDYG-KKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +DYG KKSKL F +YPSPQVST+VVE YNSVLSTHSLLEHTDV+ +LDNEAIY+IC+ SLDIE+PTYTNLNR             RF G +N+DI + QTNL
Sbjct:  165 LDYGGKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFMLDNEAIYNICKNSLDIEKPTYTNLNRLIAQVISSLTSSLRFPGQLNLDINDIQTNL 266          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.900e-32
Identity = 64/101 (63.37%), Postives = 78/101 (77.23%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            V+Y KKSKL F++YP  QVSTAVVE YNS+L+TH+ LEH+D + ++DNEAIYDIC R+LDIERPTYTNLNR             RF+GA+NVD+ EFQTNL
Sbjct:   34 VEYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICNRNLDIERPTYTNLNRLIGQIVSSVTASLRFNGALNVDLIEFQTNL 134          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.206e-31
Identity = 62/101 (61.39%), Postives = 77/101 (76.24%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKK KL F +YP+PQV+T+VVE YNS+L+TH+ LEH+D + ++DNEAIYDICRR+L IERP Y NLNR             RFDG++NVD+ EFQTNL
Sbjct:  159 VDYGKKCKLEFCVYPAPQVATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPNYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.881e-31
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F +YP+PQ +T+VVE YNS+L+TH+ LEH+D + ++DNEAIYDICRR+L +ERP Y NLNR             RFDG++NVD+ EFQTNL
Sbjct:  159 VDYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNL 259          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.881e-31
Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 1
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKL F +YP+PQ +T+VVE YNS+L+TH+ LEH+D + ++DNEAIYDICRR+L IERP+Y NLNR             RFDG++NVD+ EFQTNL
Sbjct:  159 VDYGKKSKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPSYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNL 259          
The following BLAST results are available for this feature:
BLAST of FK826725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBA_HAECO4.294e-3567.33Tubulin alpha chain OS=Haemonchus contortus PE=2 S... [more]
TBA4B_HUMAN4.748e-3466.34Putative tubulin-like protein alpha-4B OS=Homo sap... [more]
TBA2_CHICK6.201e-3467.33Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA1_PNECA4.019e-3364.36Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]
TBA_DICPU3.403e-3267.35Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBA_DICDI3.403e-3266.67Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]
TBA3_CHICK9.900e-3263.37Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA_MYCGR2.206e-3161.39Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA_GIBZE2.881e-3160.40Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA1_EMENI2.881e-3161.39Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]

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Properties
Property NameValue
Genbank descriptionclone499 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 499, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826725 ID=FK826725; Name=FK826725; organism=Citrus sinensis; type=EST; length=346bp
ACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAACGCCTATCTGTAGATTA
TGGAAAGAAGTCAAAGCTTGGCTTCACTATCTACCCTTCTCCTCAGGTAT
CAACAGCAGTTGTGGAGACTTATAACAGTGTTCTGTCTACTCATTCCCTT
CTTGAACACACAGATGTTGCTGTGCTATTGGACAATGAAGCTATTTATGA
CATCTGCAGGAGATCCCTGGATATTGAGAGGCCAACTTACACTAATTTGA
ATCGATTGATATCTCAAATCATATCATCTTTGACAACTTCATTGAGGTTT
GATGGAGCTATTAATGTTGATATTACAGAGTTCCAGACCAACCTTG
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