FK826725

Overview
NameFK826725
Unique NameFK826725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12391 contig Csv1_Contig12391:574..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.351e-41
Identity = 81/101 (80.20%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVSTAVVE YNSVLSTHSLLEHTDVAV+LDNEA+YDICRR+LDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.351e-41
Identity = 82/101 (81.19%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDV+VLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.010e-41
Identity = 82/101 (81.19%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+ EFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.010e-41
Identity = 82/101 (81.19%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+ EFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1_ELEIN (Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.010e-41
Identity = 82/101 (81.19%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+ EFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.010e-41
Identity = 84/101 (83.17%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VD+GKKSKLGFTIYPSPQVSTAVVE YNSVLSTHSLLEHTDV VLLDNEAIYDICRRSLDIERPTY+NLNR             RFDGAINVDITEFQTNL
Sbjct:  159 VDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLNRLISQTISSLTTSLRFDGAINVDITEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.237e-41
Identity = 81/101 (80.20%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDVA+LLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+ EFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAILLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.237e-41
Identity = 82/101 (81.19%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYG+KSKLGFTIYPSPQ+STAVVE YNSVLSTHSL+EHTDV VLLDNEAIYDIC+RSLDIERPTYTNLNR             RFDGAINVDITEFQTNL
Sbjct:  159 VDYGRKSKLGFTIYPSPQISTAVVEPYNSVLSTHSLIEHTDVVVLLDNEAIYDICKRSLDIERPTYTNLNRLISQVISSLTTSLRFDGAINVDITEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA1_MAIZE (Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.237e-41
Identity = 81/101 (80.20%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQVST+VVE YNSVLSTHSLLEHTDVA+LLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+ EFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAILLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNL 259
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBA_DAUCA (Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.840e-41
Identity = 80/101 (79.21%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:   43 VDYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            VDYGKKSKLGFT+YPSPQ+ST+VVE YNSVLSTHSLLEHTDV+VLLDNEAIYDIC+RSLDIERPTYTNLNR             RFDGA+NVD+TEFQTNL
Sbjct:  159 VDYGKKSKLGFTVYPSPQISTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICKRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 259
The following BLAST results are available for this feature:
BLAST of FK826725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBA1_STYLE2.351e-4180.20Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA1_ANEPH2.351e-4181.19Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]
TBA3_HORVU4.010e-4181.19Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ... [more]
TBA2_ORYSJ4.010e-4181.19Tubulin alpha-2 chain OS=Oryza sativa subsp. japon... [more]
TBA1_ELEIN4.010e-4181.19Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 ... [more]
TBA1_ARATH4.010e-4183.17Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBA2_MAIZE5.237e-4180.20Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]
TBA2_ELEIN5.237e-4181.19Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBA1_MAIZE5.237e-4180.20Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV... [more]
TBA_DAUCA6.840e-4179.21Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionclone499 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 499, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826725 ID=FK826725; Name=FK826725; organism=Citrus sinensis; type=EST; length=346bp
ACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAACGCCTATCTGTAGATTA
TGGAAAGAAGTCAAAGCTTGGCTTCACTATCTACCCTTCTCCTCAGGTAT
CAACAGCAGTTGTGGAGACTTATAACAGTGTTCTGTCTACTCATTCCCTT
CTTGAACACACAGATGTTGCTGTGCTATTGGACAATGAAGCTATTTATGA
CATCTGCAGGAGATCCCTGGATATTGAGAGGCCAACTTACACTAATTTGA
ATCGATTGATATCTCAAATCATATCATCTTTGACAACTTCATTGAGGTTT
GATGGAGCTATTAATGTTGATATTACAGAGTTCCAGACCAACCTTG
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