FK826725

Overview
NameFK826725
Unique NameFK826725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12391 contig Csv1_Contig12391:574..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_MELLI (Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.616e-16
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP+VS  VVE YN+ LS H L+E++D    +DNEA+YDIC R+L ++ PTY +LN              RF G +N D+ +   N+
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLQTPTYGDLNHLVSIVMSGITTCLRFPGQLNSDLRKLAVNM 257
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB2_EMENI (Tubulin beta-2 chain OS=Emericella nidulans GN=tubC PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.616e-16
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP+VS  VVE YN+ LS H L+EH+D    LDN+A+YDIC R+L +  P+Y +LN              RF G +N D+ +   N+
Sbjct:  167 FSVMPSPKVSDTVVEPYNATLSVHQLVEHSDETFCLDNDALYDICIRTLKLSSPSYGDLNHLVSAVMSGITVSLRFPGQLNSDLRKLAVNM 257
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB1_GLOMM (Tubulin beta-1 chain OS=Glossina morsitans morsitans PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.616e-16
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +++ PSP+VS  VVE YN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN              RF G +N D+ +   N+
Sbjct:  167 YSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNM 257
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB1_DROME (Tubulin beta-1 chain OS=Drosophila melanogaster GN=betaTub56D PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.616e-16
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +++ PSP+VS  VVE YN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN              RF G +N D+ +   N+
Sbjct:  167 YSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNM 257
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB1_CHICK (Tubulin beta-1 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.616e-16
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP+VS  VVE YN+ +S H L+E+TD    +DNEA+YDIC R+L +  PTY +LN              RF G +N D+ +   N+
Sbjct:  167 FSVMPSPKVSDTVVEPYNATVSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNM 257
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 9.946e-16
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F+I PSP+VS  VVE YN+ LS H L+E+ D    +DNEA+YDIC ++L +  PTY +LN              RF G +N D+ +   N+
Sbjct:   95 FSILPSPKVSDTVVEPYNATLSVHQLIENADETFCIDNEALYDICSKTLKLPTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNM 185
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_MYCGR (Tubulin beta chain OS=Mycosphaerella graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.946e-16
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP+VS  VVE YN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN              RF G +N D+ +   N+
Sbjct:  167 FSVMPSPKVSDTVVEPYNATLSVHQLVENSDATFCIDNEALYDICMRTLKLNNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNM 257
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_EUPFO (Tubulin beta chain OS=Euplotes focardii PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.946e-16
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F+++PSP+VS  VVE YN+ LS H L+E+ D  + +DNEA+YDIC R+L    PTY +LN              RF G +N D+ +   NL
Sbjct:  167 FSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKPTTPTYGDLNHLVSAVISGVTSCLRFPGQLNSDLRKLAVNL 257
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_CERBT (Tubulin beta chain OS=Cercospora beticola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.946e-16
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP+VS  VVE YN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN              RF G +N D+ +   N+
Sbjct:  167 FSVMPSPKVSDTVVEPYNATLSVHQLVENSDATFCIDNEALYDICMRTLKLNNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNM 257
[Close]
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB8_PANTR (Tubulin beta-8 chain OS=Pan troglodytes GN=TUBB8 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.946e-16
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F+I PSP+VS  VVE YN+ LS H L+E+ D    +DNEA+YDIC ++L +  PTY +LN              RF G +N D+ +   N+
Sbjct:  167 FSILPSPKVSDTVVEPYNATLSVHQLIENADETFCIDNEALYDICSKTLKLPTPTYGDLNHLVCATMSGVTTCLRFPGQLNADLRKLAVNM 257
The following BLAST results are available for this feature:
BLAST of FK826725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBB_MELLI7.616e-1641.76Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3... [more]
TBB2_EMENI7.616e-1641.76Tubulin beta-2 chain OS=Emericella nidulans GN=tub... [more]
TBB1_GLOMM7.616e-1641.76Tubulin beta-1 chain OS=Glossina morsitans morsita... [more]
TBB1_DROME7.616e-1641.76Tubulin beta-1 chain OS=Drosophila melanogaster GN... [more]
TBB1_CHICK7.616e-1641.76Tubulin beta-1 chain OS=Gallus gallus PE=2 SV=1[more]
YI016_HUMAN9.946e-1641.76Putative tubulin beta chain-like protein ENSP00000... [more]
TBB_MYCGR9.946e-1640.66Tubulin beta chain OS=Mycosphaerella graminicola G... [more]
TBB_EUPFO9.946e-1642.86Tubulin beta chain OS=Euplotes focardii PE=3 SV=1[more]
TBB_CERBT9.946e-1640.66Tubulin beta chain OS=Cercospora beticola GN=TUB1 ... [more]
TBB8_PANTR9.946e-1641.76Tubulin beta-8 chain OS=Pan troglodytes GN=TUBB8 P... [more]

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Properties
Property NameValue
Genbank descriptionclone499 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 499, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826725 ID=FK826725; Name=FK826725; organism=Citrus sinensis; type=EST; length=346bp
ACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAACGCCTATCTGTAGATTA
TGGAAAGAAGTCAAAGCTTGGCTTCACTATCTACCCTTCTCCTCAGGTAT
CAACAGCAGTTGTGGAGACTTATAACAGTGTTCTGTCTACTCATTCCCTT
CTTGAACACACAGATGTTGCTGTGCTATTGGACAATGAAGCTATTTATGA
CATCTGCAGGAGATCCCTGGATATTGAGAGGCCAACTTACACTAATTTGA
ATCGATTGATATCTCAAATCATATCATCTTTGACAACTTCATTGAGGTTT
GATGGAGCTATTAATGTTGATATTACAGAGTTCCAGACCAACCTTG
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