FK826725

Overview
NameFK826725
Unique NameFK826725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12391 contig Csv1_Contig12391:574..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_NEUCR (Tubulin beta chain OS=Neurospora crassa GN=tub-2 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.697e-15
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP+VS  VVE YN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN              RF G +N D+ +   N+
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTVSLRFPGQLNSDLRKLAVNM 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_MYCPJ (Tubulin beta chain OS=Mycosphaerella pini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.697e-15
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP+VS  VVE YN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN              RF G +N D+ +   N+
Sbjct:  167 FSVMPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLNNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNM 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_ERYGR (Tubulin beta chain OS=Erysiphe graminis subsp. hordei GN=TUB2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.697e-15
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP+VS  VVE YN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN              RF G +N D+ +   N+
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNM 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_BOTFU (Tubulin beta chain OS=Botryotinia fuckeliana GN=tubA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.697e-15
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP+VS  VVE YN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN              RF G +N D+ +   N+
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNM 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB6_ECTVR (Tubulin beta-6 chain OS=Ectocarpus variabilis GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.697e-15
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   46 DYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +Y  +    +++ PSP+VS  VVE YN+ LS H L+E+ D    LDNEA+YDIC R+L +  PTY +LN              RF G +N D+ +   N+
Sbjct:  158 EYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNM 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB5_ECTVR (Tubulin beta-5 chain OS=Ectocarpus variabilis GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.697e-15
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   46 DYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +Y  +    +++ PSP+VS  VVE YN+ LS H L+E+ D    LDNEA+YDIC R+L +  PTY +LN              RF G +N D+ +   N+
Sbjct:  158 EYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNM 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB2_COLGR (Tubulin beta-2 chain OS=Colletotrichum graminicola GN=TUB2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.697e-15
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP+VS  VVE YN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN              RF G +N D+ +   N+
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNM 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB2_COLGL (Tubulin beta-2 chain OS=Colletotrichum gloeosporioides GN=TUB2 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.697e-15
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP+VS  VVE YN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN              RF G +N D+ +   N+
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNM 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_TRIRU (Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.216e-15
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP VS  VVE YN+ LS H L+EH+D    +DNEA+Y+IC R+L +  P+Y +LN              RF G +N D+ +   N+
Sbjct:  167 FSVVPSPMVSDTVVEPYNATLSIHQLVEHSDETFCIDNEALYNICMRTLKLTNPSYGDLNHLVSAVMSGVSTSLRFPGQLNSDLRKLAVNM 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_PHANO (Tubulin beta chain OS=Phaeosphaeria nodorum GN=tubA PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.216e-15
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP+VS  VVE YN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN              RF G +N D+ +   N+
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSIHQLVENSDETFCIDNEALYDICMRTLKLNNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNM 257          
The following BLAST results are available for this feature:
BLAST of FK826725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBB_NEUCR1.697e-1540.66Tubulin beta chain OS=Neurospora crassa GN=tub-2 P... [more]
TBB_MYCPJ1.697e-1540.66Tubulin beta chain OS=Mycosphaerella pini GN=TUB1 ... [more]
TBB_ERYGR1.697e-1540.66Tubulin beta chain OS=Erysiphe graminis subsp. hor... [more]
TBB_BOTFU1.697e-1540.66Tubulin beta chain OS=Botryotinia fuckeliana GN=tu... [more]
TBB6_ECTVR1.697e-1539.00Tubulin beta-6 chain OS=Ectocarpus variabilis GN=T... [more]
TBB5_ECTVR1.697e-1539.00Tubulin beta-5 chain OS=Ectocarpus variabilis GN=T... [more]
TBB2_COLGR1.697e-1540.66Tubulin beta-2 chain OS=Colletotrichum graminicola... [more]
TBB2_COLGL1.697e-1540.66Tubulin beta-2 chain OS=Colletotrichum gloeosporio... [more]
TBB_TRIRU2.216e-1540.66Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=... [more]
TBB_PHANO2.216e-1540.66Tubulin beta chain OS=Phaeosphaeria nodorum GN=tub... [more]

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Properties
Property NameValue
Genbank descriptionclone499 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 499, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826725 ID=FK826725; Name=FK826725; organism=Citrus sinensis; type=EST; length=346bp
ACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAACGCCTATCTGTAGATTA
TGGAAAGAAGTCAAAGCTTGGCTTCACTATCTACCCTTCTCCTCAGGTAT
CAACAGCAGTTGTGGAGACTTATAACAGTGTTCTGTCTACTCATTCCCTT
CTTGAACACACAGATGTTGCTGTGCTATTGGACAATGAAGCTATTTATGA
CATCTGCAGGAGATCCCTGGATATTGAGAGGCCAACTTACACTAATTTGA
ATCGATTGATATCTCAAATCATATCATCTTTGACAACTTCATTGAGGTTT
GATGGAGCTATTAATGTTGATATTACAGAGTTCCAGACCAACCTTG
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