FK826725

Overview
NameFK826725
Unique NameFK826725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12391 contig Csv1_Contig12391:574..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.436e-14
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   46 DYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +Y  +    F+I P+P VS  VVE YNS+LS H L+++ D+ + +DNEA+YDI  R+L I+ P Y +LN+             RF G +N D+ +   NL
Sbjct:  162 EYPDRMLSTFSILPAPNVSETVVEPYNSLLSIHQLVDNCDLTICIDNEALYDIAVRTLKIKSPGYKDLNQLIAKVMCGVSTSLRFPGQLNGDLRKLGMNL 261          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.436e-14
Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   46 DYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +Y  +  L F+++  P+ S  VVE YN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN              RF G +N D+ +   NL
Sbjct:  158 EYPDRMMLTFSVFAVPEGSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNL 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_CANAL (Tubulin beta chain OS=Candida albicans GN=TUB2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.876e-14
Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            F++ PSP+VS  V+E YN+ LS H L+E++D    +DNEA+Y+IC+ +L + +P+Y  LN              R+ G +N D+ +   NL
Sbjct:  167 FSVVPSPKVSDTVIEPYNATLSVHQLVENSDETFCIDNEALYNICQNTLKLPQPSYAELNNLVSSVMSGVTTSLRYPGQLNSDLRKLAVNL 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.200e-14
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   46 DYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAIN 315
            +Y  +    +++ PSP+VS  VVE YN+ LS H L+E+ D  + LDNEA+YDIC R+L +  PTY +LN              RF G +N
Sbjct:  157 EYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRTLKLTNPTYGDLNHLVCAAMSGITTLLRFPGQLN 246          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.216e-13
Identity = 36/100 (36.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:   46 DYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            D+  +    F++ PSP+VS  VVE YN+ LS H L+E+ D    +DNEA+YD+C R+L +  P Y +LN              RF G +N  + +   N+
Sbjct:  158 DFPDRMICTFSVVPSPKVSDTVVEPYNATLSIHQLVENADETFCIDNEALYDMCFRTLKLNNPGYGDLNHLVSLVMSGVTTCLRFPGQLNAYLRKLAVNM 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_PORYE (Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.588e-13
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +++ PSP+VS  VVE YN  LS H L+E+ D    +DNEA+Y+IC  +L    P Y +LN+             RF G +N D+ +   NL
Sbjct:  167 YSVMPSPKVSDTVVEPYNCTLSVHQLVENADAVFCIDNEALYNICYNTLKKPEPAYPDLNKLVSGVMSGITSSLRFPGQLNSDLRKLAVNL 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_PORPU (Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.588e-13
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1
Query:   73 FTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +++ PSP+VS  VVE YN  LS H L+E+ D    +DNEA+Y+IC  +L    P Y +LN+             RF G +N D+ +   NL
Sbjct:  167 YSVMPSPKVSDTVVEPYNCTLSVHQLVENADAVFCIDNEALYNICYNTLKKPEPAYPDLNKLVSGVMSGITSSLRFPGQLNSDLRKLAVNL 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.709e-13
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 1
Query:  178 LDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +DNEAIYDICRR+L IERP YTNLNR             RFDG++NVD+ EFQTNL
Sbjct:    1 VDNEAIYDICRRNLGIERPGYTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNL 56          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_BOMMO (Tubulin beta chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.344e-12
Identity = 35/100 (35.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:   46 DYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +Y  +    +++ PSP VS  VVE YN+ LS + L+E++  +  +DNEA+Y IC R+L +  PTY  LN              RF G +N D+ +   N+
Sbjct:  158 EYPDRITATYSVVPSPTVSETVVEPYNATLSVNQLIENSIQSYCIDNEALYYICHRTLKLMAPTYGALNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNM 257          
BLAST of FK826725 vs. ExPASy Swiss-Prot
Match: TBB_EUGGR (Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.672e-12
Identity = 35/100 (35.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:   46 DYGKKSKLGFTIYPSPQVSTAVVETYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNL 345
            +Y  +  + F++ PSP+VS  VVE YN+ LS H L+E+ D  + + NEA+YDIC  +L +  PT+ +                RF G +N D+ +   NL
Sbjct:  156 EYPDRMMMTFSVIPSPKVSDTVVEPYNTTLSVHQLVENADEVMCIGNEALYDICLPTLKLTTPTFGH-ETLVSAVMSGVTCCLRFPGQLNSDLRKLAVNL 254          
The following BLAST results are available for this feature:
BLAST of FK826725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBB2_SUIBO1.436e-1439.00Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBB1_SOYBN1.436e-1437.00Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ... [more]
TBB_CANAL1.876e-1437.36Tubulin beta chain OS=Candida albicans GN=TUB2 PE=... [more]
TBB_ACHKL3.200e-1441.11Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1[more]
TBB_ENCIN1.216e-1336.00Tubulin beta chain OS=Encephalitozoon intestinalis... [more]
TBB_PORYE1.588e-1338.46Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 ... [more]
TBB_PORPU1.588e-1338.46Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 P... [more]
TBAA_PNECA2.709e-1362.50Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]
TBB_BOMMO1.344e-1235.00Tubulin beta chain OS=Bombyx mori PE=2 SV=1[more]
TBB_EUGGR6.672e-1235.00Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionclone499 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 499, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826725 ID=FK826725; Name=FK826725; organism=Citrus sinensis; type=EST; length=346bp
ACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAACGCCTATCTGTAGATTA
TGGAAAGAAGTCAAAGCTTGGCTTCACTATCTACCCTTCTCCTCAGGTAT
CAACAGCAGTTGTGGAGACTTATAACAGTGTTCTGTCTACTCATTCCCTT
CTTGAACACACAGATGTTGCTGTGCTATTGGACAATGAAGCTATTTATGA
CATCTGCAGGAGATCCCTGGATATTGAGAGGCCAACTTACACTAATTTGA
ATCGATTGATATCTCAAATCATATCATCTTTGACAACTTCATTGAGGTTT
GATGGAGCTATTAATGTTGATATTACAGAGTTCCAGACCAACCTTG
back to top